hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpm/mpm02193/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA2014 ( 1045 res) mpm02193 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- FH2 Formin Homology 2 Domain 482.6 1.8e-140 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- FH2 1/1 578 1012 .. 1 499 [] 482.6 1.8e-140 Alignments of top-scoring domains: FH2: domain 1 of 1, from 578 to 1012: score 482.6, E = 1.8e-140 *->pkkepkpkkkLKqLhWdklnslrssrqApsNPseisegtvWettvnd kk++k+k +L+ ++W++l+ P++i++ tv+ mKIAA2014 578 IKKPIKTKFRLPVFNWTALK-----------PNQING-TVF-----S 607 kldeekfLynnldldeleelFaakektkkakkrsvsekksklkkkkvqqn +ld+ek+ ++ldld++eelF k+k++++ ++ ++k k ++k++++ mKIAA2014 608 ELDDEKI-LEDLDLDRFEELF--KTKAQGPAL-DLICSKNKTAQKAASK- 652 lkilDpkrsqnpplaIllrslhcklsfeetvikeailevDedvlsvdlle +++l ++r++n laI+lr+ s ee i+ ai+++D ++l+vd++e mKIAA2014 653 VTLLEANRAKN--LAITLRKA--GRSAEE--ICRAIHTFDLQTLPVDFVE 696 qLlkfaPYsktkeelkklreykeddekspeeLaraeqiFlllisnLipyl +L++f+P t+ e+k+lr+y+++ + ++eeLa +++ F+ll+s+ + +l mKIAA2014 697 CLMRFLP---TEAEVKLLRQYERE-RQPLEELAAEDR-FMLLFSK-VERL 740 eeRlnallfkanFeeevedLkpklekveaAceeLreSkkFrklLeliLai +R+ ++f nF +++++L p+l++++aA+ ++++S k++++Le+iLa+ mKIAA2014 741 TQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILAL 790 GNyMNagsrrrrGqAqGFkLssLlkLsdvKsadnktTLLHflvkiirkky GNyMN +s+r G+++GFkL+sL+ L+d+Ks+d+k+TLLHf++ ++++ky mKIAA2014 791 GNYMN-SSKR--GAVYGFKLQSLDLLLDTKSTDRKMTLLHFIALTVKEKY 837 pdllkFysdlhhvdkaskvnleqlekdvkqlerqiknlEldkggLsdpeg p+l++F +lh+v+ka++v+le++ dvk+l+r ++El+ +++s+ mKIAA2014 838 PELANFWQELHFVEKAAAVSLENVLLDVKELGR---GMELIRRECSI--- 881 hpddkflevmtpFlkaAkekyekLqkdlrdlktrfeklveyygedpkdrd h+ v++ Fl k++kLq d+++ +++++++v+y+ge+pk+ mKIAA2014 882 HD----NSVLRNFLSTNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKT-- 925 vspeeFFkdfneFlkeFkkaaeenlaiEskrkeeEeeerrakqlalrvke ++p FF +f++F+ ++k+a +en + ++++ee +r kqla +e mKIAA2014 926 TPPSVFFPVFVRFIRSYKEAEQEN-----EARKKQEEVMREKQLA---QE 967 tteyeqssskqkeneerrvernplmdfeverdflgvldsllkelrtdssf + +++ q + + +++++++e+ +++++++ + ++++d ++ mKIAA2014 968 AKKLDAKTPSQRN-------KWQQQELIAELRRRQAKEHRPVYEGKDGTI 1010 er<-* e+ mKIAA2014 1011 ED 1012 //