hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj31262/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA2011  ( 771 res)   mfj31262

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec7     Sec7 domain                                    263.9    1.3e-74   1
PH       Pleckstrin homology domain.                     60.4    2.4e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sec7       1/1     266   455 ..     1   226 []   263.9  1.3e-74
PH         1/1     504   618 ..     1    82 []    60.4  2.4e-13

Alignments of top-scoring domains:
Sec7: domain 1 of 1, from 266 to 455: score 263.9, E = 1.3e-74
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                          ++l+s +++++  + + ++ ++++ + ++k++++ +q +Ak l
   mKIAA2011   266    EPPLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAAQRLAKRL 312  

                   ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd
                   y          +  g+ k+ ++++Lg+ +++f++lv  +++++f F+g+ 
   mKIAA2011   313 Y----------RLDGFRKADVARHLGK-NNDFSKLVAGEYLKFFVFTGMT 351  

                   ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski
                   ld+ALR fL+ ++L+GE+Q+++R+l +Fs+rY++cNp+ +s         
   mKIAA2011   352 LDQALRVFLKELALMGETQERERVLAHFSQRYFQCNPEALS--------- 392  

                   qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr
                       + D+a++L+++l++LNTDLH++n++k        +Mt+ dFi+Nl+
   mKIAA2011   393 ----SEDGAHTLTCALMLLNTDLHGHNIGK--------RMTCGDFIGNLE 430  

                   ginkeiddgedlprefLeelYdsIknnei<-*
                   g+n    dg+d+pre+L++lY sIkn+++   
   mKIAA2011   431 GLN----DGGDFPRELLKALYSSIKNEKL    455  

PH: domain 1 of 1, from 504 to 618: score 60.4, E = 2.4e-13
                   *->vikeGwLlkks............k.swkkryfvLfngvLlyyksk..
                      v k+G L +k + +++ ++++++k++wk  + +L++  L++ k++ +
   mKIAA2011   504    VYKHGALVRKVhadpdcrktprgKrGWKSFHGILKGMILYLQKEEyq 550  

                   ........kpkgsipLsgcsvre.p.......cFeivt.dr.tlllqAes
                   +++  ++ ++k  i++ ++  ++  + ++++++F+++t d++++l+qA+s
   mKIAA2011   551 pgkalseaELKNAISIHHALATRaSdyskrphVFYLRTaDWrVFLFQAPS 600  

                   eeereeWvealqsaiaka<-*
                    e++++W++ ++ ++a     
   mKIAA2011   601 LEQMQSWITRINVVAAMF    618  

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