hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj31262/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA2011  ( 771 res)   mfj31262

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec7     Sec7 domain                                    340.2    2.3e-98   1
PH       PH domain                                       75.4    1.2e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sec7       1/1     268   455 ..     1   221 []   340.2  2.3e-98
PH         1/1     504   616 ..     1    92 []    75.4  1.2e-18

Alignments of top-scoring domains:
Sec7: domain 1 of 1, from 268 to 455: score 340.2, E = 2.3e-98
                   *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle
                      + s+ +++++++ +++++++ G++d++s+g++ad++++q++Ak+L+ 
   mKIAA2011   268    PLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAAQRLAKRLY- 313  

                   eteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLks
                   +++G++K++++++LG+n+df++ v++e++k +F+Ftg++Ld+ALR+fLk+
   mKIAA2011   314 RLDGFRKADVARHLGKNNDFSKLVAGEYLK-FFVFTGMTLDQALRVFLKE 362  

                   FRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDsa
                   ++L+GE+Q+++R+l++FS+rY+qc  Np+++s++             D+a
   mKIAA2011   363 LALMGETQERERVLAHFSQRYFQC--NPEALSSE-------------DGA 397  

                   yvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEELg
                   ++L+++l++LNTDLH +++++k+   MT++dFi+N++            g
   mKIAA2011   398 HTLTCALMLLNTDLH-GHNIGKR---MTCGDFIGNLE------------G 431  

                   indGgDlprefLtelYesIkneei<-*
                   +ndGgD+pre+L++lY+sIkne++   
   mKIAA2011   432 LNDGGDFPRELLKALYSSIKNEKL    455  

PH: domain 1 of 1, from 504 to 616: score 75.4, E = 1.2e-18
                   *->vikeGwLlkkg...........gkkswkkRyfvLfndvLlyykdkk.
                      v+k+G L +k + +++ +++++gk++wk  + +L++  L++ k++ +
   mKIAA2011   504    VYKHGALVRKVhadpdcrktprGKRGWKSFHGILKGMILYLQKEEYq 550  

                   .......kkpkgsipLsgiqvekvpdn.krkncFeirt.dretlllqaes
                   +++  +++++k  i++ ++  ++++d++kr+++F++rt d++++l+qa+s
   mKIAA2011   551 pgkalseAELKNAISIHHALATRASDYsKRPHVFYLRTaDWRVFLFQAPS 600  

                   eeerkeWvkaiqsair<-*
                    e++++W++ i+ +++   
   mKIAA2011   601 LEQMQSWITRINVVAA    616  

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