hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph00181/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA2009  ( 702 res)   mph00181

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
KH       K homology RNA-binding domain                   92.5      5e-23   2
RING     Ring finger                                     28.6    0.00085   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KH         1/2     172   265 ..     1    63 []    27.4    0.002
KH         2/2     292   359 ..     1    63 []    66.8  2.7e-15
RING       1/1     651   690 ..     1    23 []    28.6  0.00085

Alignments of top-scoring domains:
KH: domain 1 of 2, from 172 to 265: score 27.4, E = 0.002
                   *->a.vtiev.ipa.dkvGriIGkgG........................
                       + t+ v++p++++v+ i+G++G++++++++++ + +++++ ++  +
   mKIAA2009   172    VnMTECVpVPSsEHVAEIVGRQGgsgrdgdrrgfsisptpslepwlp 218  

                   .stIkkieeetgvkIdipg...ertvtItGppenvekAkelileile<-*
                   +  Ik+++ +t++ I+ p +++e ++++tG +e+v+ A+++i +  e   
   mKIAA2009   219 gCKIKALRAKTNTYIKTPVrgeEPVFVVTGRKEDVAMARREIISAAE    265  

KH: domain 2 of 2, from 292 to 359: score 66.8, E = 2.7e-15
                   *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg...ertv
                       ++ti+v++p + vG+++G++G+tIk+i+++t + I+ p +++e ++
   mKIAA2009   292    GqTTIQVrVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSrdkEPVF 338  

                   tItGppenvekAkelileile<-*
                   ++tG penv +A+e+i++ ++   
   mKIAA2009   339 EVTGMPENVDRAREEIEAHIA    359  

RING: domain 1 of 1, from 651 to 690: score 28.6, E = 0.00085
                   *->CpICle....pvvlpCgH..FCr.Ci..........CPlC<-*
                      C++C+e++  + + pCgH+ FC +C ++  ++++++CP+C   
   mKIAA2009   651    CSVCFEseviAALVPCGHnlFCMeCAnriceksepeCPVC    690  

//