hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00181/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA2009  ( 702 res)   mph00181

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
KH_1     KH domain                                       70.8    2.8e-17   2
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           20.0     0.0086   1
zf-P11   P-11 zinc finger                                 2.2       0.43   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KH_1       1/2     175   260 ..     1    73 []    10.0     0.31
KH_1       2/2     295   354 ..     1    73 []    62.2  1.1e-14
zf-C3HC4   1/1     651   690 ..     1    50 []    20.0   0.0086
zf-P11     1/1     647   699 ..     1    50 []     2.2     0.43

Alignments of top-scoring domains:
KH_1: domain 1 of 2, from 175 to 260: score 10.0, E = 0.31
                   *->tirili.psskvgriIGkg.........................Gst
                      t+ + +++s++v  i G+++++++++++++ + +++++ ++  +G +
   mKIAA2009   175    TECVPVpSSEHVAEIVGRQggsgrdgdrrgfsisptpslepwlpGCK 221  

                   IkeIreetGakIdipddgesknlpedplngsgertvtIsGtpeavekAkk
                   Ik++r +t++ I+ p  g      e+p       +++++G +e+v+ A++
   mKIAA2009   222 IKALRAKTNTYIKTPVRG------EEP-------VFVVTGRKEDVAMARR 258  

                   li<-*
                   +i   
   mKIAA2009   259 EI    260  

KH_1: domain 2 of 2, from 295 to 354: score 62.2, E = 1.1e-14
                   *->tirilipsskvgriIGkgGstIkeIreetGakIdipddgesknlped
                      ti++ +p + vg++ G++G+tIk+I+++t + I  p  +      ++
   mKIAA2009   295    TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRD------KE 335  

                   plngsgertvtIsGtpeavekAkkli<-*
                   p       +++++G pe+v++A+++i   
   mKIAA2009   336 P-------VFEVTGMPENVDRAREEI    354  

zf-C3HC4: domain 1 of 1, from 651 to 690: score 20.0, E = 0.0086
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C +C+e +  +      + pCgH     +fC +C  r  + + +  C
   mKIAA2009   651    CSVCFESEVIAA-----LVPCGHN----LFCMECANRICE-KSEPEC 687  

                   plC<-*
                   p+C   
   mKIAA2009   688 PVC    690  

zf-P11: domain 1 of 1, from 647 to 699: score 2.2, E = 0.43
                   *->GplnCKsCWfkd..knLveCsdHYLClrClqllLsvSe.rCpiCkkP
                      G   C  C   +    Lv C     C  C + +   Se+ Cp+C   
   mKIAA2009   647    GSRDCSVCFESEviAALVPCGHNLFCMECANRICEKSEpECPVCHTA 693  

                   LPTklr<-*
                       +r   
   mKIAA2009   694 VTQAIR    699  

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