hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/meg/meg00885/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA2002  ( 710 res)   meg00885

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
S_TKc    Serine/Threonine protein kinases, catalytic    -52.2    7.3e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
S_TKc      1/1     308   630 ..     1   231 []   -52.2  7.3e-06

Alignments of top-scoring domains:
S_TKc: domain 1 of 1, from 308 to 630: score -52.2, E = 7.3e-06
                   *->YellkklGkGaFGkVylardkk.tgrlvAiKvik.............
                                     y a   k+    +A+K+ k++ +++++  ++ 
   mKIAA2002   308    ---------------YTASYAKdPLSNYAVKICKskakesqqyyhsl 339  

                   ..................................................
                     +++ + + + +++ ++   + +++  + ++++ +++ +++++++++++
   mKIAA2002   340 avrqslpvhfniqqdcghflaevpsrllpwedpdapekaedgtedseeeg 389  

                   ...............erilrEikiLkk...dHPNIVkLydvfeddklylV
                   + ++ ++++++ +++e  ++E +   +++++   +V   +v +      V
   mKIAA2002   390 kaetlggnpepcsetEPSQKENQRVTNrkqRSHVVVITREVPH----LTV 435  

                   mEyceGdlGdLfdllkkrgrrglrkvlsE.earfyfrQilsaLeYLHsqg
                    +++     +L ++  +         l E++++ ++ Q++s+Le+L   +
   mKIAA2002   436 ADFVRD---SLAHHGNSPD-------LYErQVCLLLLQLCSGLEHLKPYH 475  

                   IiHRDLKPeNiLLds.......................hvKlaDFGlArq
                   + H+DL  eN+LL ++++++  +++++ ++ ++   ++++ ++ F  A+q
   mKIAA2002   476 VTHCDLRLENLLLVQhqpggaaqgpspadpcptlacptRLIVSNFSQAKQ 525  

                   l.......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyElltGkp
                    ++  +++     ++  +APE+++ ++Y   ++D    G+++yE+l    
   mKIAA2002   526 KshlvdpqILRDQSR--LAPEIItatQYK--KCDEFQTGILIYEMLHLPN 571  

                   PFp..qldlifkkig............SpeakdLikklLvkdPekRlta.
                   PF+++ + +  +  +++ ++ + ++++S  + +L + lL+ +P++R+ ++
   mKIAA2002   572 PFDenPELKEKEYTRtdlpriplrspySWGLQQLASCLLNPNPSERILIs 621  

                   eaLedeldikaHPff<-*
                   +a        + + +   
   mKIAA2002   622 DAKG------ILQCL    630  

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