hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj36052/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA2001  ( 745 res)   mfj36052

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
Retrotrans_gag Retrotransposon gag protein               39.3      9e-08   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Retrotrans_gag   1/1     341   434 ..     1   100 []    39.3    9e-08

Alignments of top-scoring domains:
Retrotrans_gag: domain 1 of 1, from 341 to 434: score 39.3, E = 9e-08
                   *->klavtfLeGrAltWwkslvarsidaidsWdelkdaFlkrFvpsavkd
                      ++  +f++G+A+ W+ s+ ++      ++  + d+ +k F +++ ++
   mKIAA2001   341    AFLISFFTGEARDWAISVTQEGSSLHANFPRFLDEIRKEFCGPIPSR 387  

                   qleseLrqlrQkgtesvreYverFkrlarqapheggvrteealisaFlrG
                    ++  +r l+Q g+ ++  Y + F+ la+ ++     +++  l+  Fl+G
   mKIAA2001   388 VAKKAIRKLKQ-GNCTLGSYADAFQFLAQFLS-----WDDCRLQNQFLKG 431  

                   Lre<-*
                   L e   
   mKIAA2001   432 LSE    434  

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