hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mic/mic17043/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA2000  ( 1263 res)   mic17043

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR      Tetratricopeptide repeats                      139.7      3e-37   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR        1/8     876   909 ..     1    34 []     8.6       54
TPR        2/8     918   951 ..     1    34 []    20.7     0.21
TPR        3/8     960   993 ..     1    34 []     8.4       56
TPR        4/8    1026  1059 ..     1    34 []    25.1   0.0099
TPR        5/8    1068  1101 ..     1    34 []    26.6   0.0035
TPR        6/8    1110  1143 ..     1    34 []    18.2      1.2
TPR        7/8    1152  1185 ..     1    34 []    30.5  0.00024
TPR        8/8    1194  1227 ..     1    34 []    23.8    0.023

Alignments of top-scoring domains:
TPR: domain 1 of 8, from 876 to 909: score 8.6, E = 54
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ +  lG  +  lg + +A+  ++++Le+ ++    
   mKIAA2000   876    ADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETA    909  

TPR: domain 2 of 8, from 918 to 951: score 20.7, E = 0.21
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ l +l+ +y + +++ +A++ y++ALe+ +n    
   mKIAA2000   918    AQSLHQLAGVYVQWKKFGDAEQLYKQALEISENA    951  

TPR: domain 3 of 8, from 960 to 993: score 8.4, E = 56
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ l  l+ +y+k+++y++A+ + +k++ +  +    
   mKIAA2000   960    ARELEALATLYHKQNKYEQAEHFRKKSVIIRQQA    993  

TPR: domain 4 of 8, from 1026 to 1059: score 25.1, E = 0.0099
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a++l+ lG++y+++++++ A+++++++Le+ +     
   mKIAA2000  1026    ARTLNELGVLYFLQNNLETAEQFLKRSLEMRERV    1059 

TPR: domain 5 of 8, from 1068 to 1101: score 26.6, E = 0.0035
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ l+nl+ ++  +++y++A+e ye+AL++ +     
   mKIAA2000  1068    AQSLNNLAALCNEKKQYEKAEELYERALDIRRRA    1101 

TPR: domain 6 of 8, from 1110 to 1143: score 18.2, E = 1.2
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a + + l+ +y k g+ d+A+  ye A+e+  +    
   mKIAA2000  1110    AYTVKHLAILYKKTGKVDKAVPLYELAVEIRQKS    1143 

TPR: domain 7 of 8, from 1152 to 1185: score 30.5, E = 0.00024
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a al nl++++ +++++ eA+  ye+AL++ ++    
   mKIAA2000  1152    ATALVNLAVLHSQMKKHSEALPLYERALKIYEDS    1185 

TPR: domain 8 of 8, from 1194 to 1227: score 23.8, E = 0.023
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       e+l+nl+++ +  g++++A e y++A+e+ +     
   mKIAA2000  1194    GETLKNLAVLSYEEGNFEKAAELYKRAMEIKEAE    1227 

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