hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mic/mic17043/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA2000 ( 1263 res) mic17043 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TPR_1 Tetratricopeptide repeat 144.7 1.6e-39 8 TPR_2 Tetratricopeptide repeat 117.8 2e-31 8 TPR_3 Tetratricopeptide repeat 25.0 0.0017 5 TPR_4 Tetratricopeptide repeat 23.2 0.0062 5 NACHT NACHT domain -35.8 0.15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- NACHT 1/1 458 618 .. 1 210 [] -35.8 0.15 TPR_1 1/8 876 909 .. 1 34 [] 7.9 4.1 TPR_2 1/8 876 909 .. 1 34 [] 6.1 42 TPR_1 2/8 918 951 .. 1 34 [] 19.9 0.059 TPR_3 1/5 918 951 .. 1 38 [] 6.9 9.9 TPR_2 2/8 918 951 .. 1 34 [] 17.0 0.45 TPR_4 1/5 960 985 .. 1 26 [] 0.8 1.5e+02 TPR_1 3/8 960 993 .. 1 34 [] 10.0 2.3 TPR_3 2/5 960 993 .. 1 38 [] 5.6 15 TPR_2 3/8 960 993 .. 1 34 [] 10.8 12 TPR_4 2/5 1026 1051 .. 1 26 [] 11.5 4.8 TPR_2 4/8 1026 1059 .. 1 34 [] 20.7 0.034 TPR_1 4/8 1026 1059 .. 1 34 [] 25.1 0.0017 TPR_4 3/5 1068 1093 .. 1 26 [] 3.5 62 TPR_1 5/8 1068 1101 .. 1 34 [] 28.4 0.00017 TPR_2 5/8 1068 1101 .. 1 34 [] 20.2 0.047 TPR_3 3/5 1068 1101 .. 1 38 [] 8.4 6.3 TPR_2 6/8 1110 1143 .. 1 34 [] 16.3 0.75 TPR_3 4/5 1109 1143 .. 1 38 [] 9.3 4.7 TPR_1 6/8 1110 1143 .. 1 34 [] 17.8 0.27 TPR_4 4/5 1152 1177 .. 1 26 [] 4.4 46 TPR_2 7/8 1152 1185 .. 1 34 [] 29.2 9.6e-05 TPR_1 7/8 1152 1185 .. 1 34 [] 35.1 1.6e-06 TPR_4 5/5 1194 1219 .. 1 26 [] 3.1 69 TPR_2 8/8 1194 1227 .. 1 34 [] 24.2 0.0031 TPR_3 5/5 1194 1227 .. 1 38 [] 10.4 3.3 TPR_1 8/8 1194 1227 .. 1 34 [] 22.1 0.013 Alignments of top-scoring domains: NACHT: domain 1 of 1, from 458 to 618: score -35.8, E = 0.15 *->rtvilqGeAGsGKTtLlqklallWaqgklpqgarfdfvFflscrels ++++ G +GsGK+ Ll k ++l +++ + + +++ ++++ s mKIAA2000 458 PPLLVSGGPGSGKSLLLSKWIQLQQKHFPNTLI-LSHFVGRPMSTSS 503 rsgeaaalLrsLadlLfsqwpepaapvre..Klf.eskvwavllelperl +s + +L L +++ ++ a + Kl++e+ w + l+ ++ mKIAA2000 504 ESSLI---IKRLTLKLMQHFWAVSALTLDpaKLLeEFPHWLEKLSARHQG 550 LkSaldppgqttvlilDGlDElvsdlgqpdgelctdwkepqpvrtLLssL +i+D++D +++ + ++ L mKIAA2000 551 S----------IIIIIDSIDQVQQVEKH------------------MKWL 572 lrkkLlpgaslLlTsRPdalrkwllrrgLespakRLLELqearylevrgF + L+ ++++++++ ++ + r+ + ++ ++ mKIAA2000 573 IDP-LPVNVRVIVSVNVETCPT--AWRLWPTL-------------HLDPL 606 seedrkeyvrkyfsde<-* s++d+ + +e mKIAA2000 607 SPKDAISI----ITAE 618 TPR_1: domain 1 of 8, from 876 to 909: score 7.9, E = 4.1 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ y lG + lg + +A+ +++ Le++++ mKIAA2000 876 ADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETA 909 TPR_2: domain 1 of 8, from 876 to 909: score 6.1, E = 42 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+++ lG+ + lg + +A+ ++++le+ +++ mKIAA2000 876 ADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETA 909 TPR_1: domain 2 of 8, from 918 to 951: score 19.9, E = 0.059 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ + +l+ +y + +k+ +A++ y++ALe+ +n mKIAA2000 918 AQSLHQLAGVYVQWKKFGDAEQLYKQALEISENA 951 TPR_3: domain 1 of 5, from 918 to 951: score 6.9, E = 9.9 *->leylyslWLAavfynkgkyqeAeelfsYallaildken<-* l+ l A v+ + +k+ +Ae+l Y+++ ++ ++ mKIAA2000 918 AQSLHQL--AGVYVQWKKFGDAEQL--YKQALEISENA 951 TPR_2: domain 2 of 8, from 918 to 951: score 17.0, E = 0.45 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a l++l+ +y + +++ +A+++y++Ale+ +n+ mKIAA2000 918 AQSLHQLAGVYVQWKKFGDAEQLYKQALEISENA 951 TPR_4: domain 1 of 5, from 960 to 985: score 0.8, E = 1.5e+02 *->arallaLArallalGdlaeArallrr<-* ar l aLA +++ + +++A+ + mKIAA2000 960 ARELEALATLYHKQNKYEQAEHFRKK 985 TPR_1: domain 3 of 8, from 960 to 993: score 10.0, E = 2.3 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ + l+ +y+k++ky++A+ + +k + ++ + mKIAA2000 960 ARELEALATLYHKQNKYEQAEHFRKKSVIIRQQA 993 TPR_3: domain 2 of 5, from 960 to 993: score 5.6, E = 15 *->leylyslWLAavfynkgkyqeAeelfsYallaildken<-* +l +l A ++ + ky++Ae++ + + i++ + mKIAA2000 960 ARELEAL--ATLYHKQNKYEQAEHF--RKKSVIIRQQA 993 TPR_2: domain 3 of 8, from 960 to 993: score 10.8, E = 12 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+ l +l+ +y k+++ye+A+++ +k++ + ++ mKIAA2000 960 ARELEALATLYHKQNKYEQAEHFRKKSVIIRQQA 993 TPR_4: domain 2 of 5, from 1026 to 1051: score 11.5, E = 4.8 *->arallaLArallalGdlaeArallrr<-* ar+l L+ +++++ +l++A++ l r mKIAA2000 1026 ARTLNELGVLYFLQNNLETAEQFLKR 1051 TPR_2: domain 4 of 8, from 1026 to 1059: score 20.7, E = 0.034 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+ l+ lG++y+ ++++e A+++++++le ++ mKIAA2000 1026 ARTLNELGVLYFLQNNLETAEQFLKRSLEMRERV 1059 TPR_1: domain 4 of 8, from 1026 to 1059: score 25.1, E = 0.0017 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a++++ lG++y+ +++++ A++++++ Le+++ mKIAA2000 1026 ARTLNELGVLYFLQNNLETAEQFLKRSLEMRERV 1059 TPR_4: domain 3 of 5, from 1068 to 1093: score 3.5, E = 62 *->arallaLArallalGdlaeArallrr<-* a+ l +LA ++ + +++ A++l +r mKIAA2000 1068 AQSLNNLAALCNEKKQYEKAEELYER 1093 TPR_1: domain 5 of 8, from 1068 to 1101: score 28.4, E = 0.00017 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ ++nl++++ ++++y++A+e ye+AL++++ mKIAA2000 1068 AQSLNNLAALCNEKKQYEKAEELYERALDIRRRA 1101 TPR_2: domain 5 of 8, from 1068 to 1101: score 20.2, E = 0.047 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a l+nl+ ++ ++++ye+A+e+ye+Al++ ++ mKIAA2000 1068 AQSLNNLAALCNEKKQYEKAEELYERALDIRRRA 1101 TPR_3: domain 3 of 5, from 1068 to 1101: score 8.4, E = 6.3 *->leylyslWLAavfynkgkyqeAeelfsYallaildken<-* l l Aa + +k++y++Aeel Y+ + ++ mKIAA2000 1068 AQSLNNL--AALCNEKKQYEKAEEL--YERALDIRRRA 1101 TPR_2: domain 6 of 8, from 1110 to 1143: score 16.3, E = 0.75 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+ l+ +y k g+ ++A+ +ye A+e+ + mKIAA2000 1110 AYTVKHLAILYKKTGKVDKAVPLYELAVEIRQKS 1143 TPR_3: domain 4 of 5, from 1109 to 1143: score 9.3, E = 4.7 *->leylyslWLAavfynkgkyqeAeelfsYallaildken<-* l y ++ LA + gk ++A+ l Y+l+ +++ + mKIAA2000 1109 LAYTVKH-LAILYKKTGKVDKAVPL--YELAVEIRQKS 1143 TPR_1: domain 6 of 8, from 1110 to 1143: score 17.8, E = 0.27 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a + + l+ +y k gk d+A+ ye A+e++ + mKIAA2000 1110 AYTVKHLAILYKKTGKVDKAVPLYELAVEIRQKS 1143 TPR_4: domain 4 of 5, from 1152 to 1177: score 4.4, E = 46 *->arallaLArallalGdlaeArallrr<-* a al++LA ++ + + eA+ l +r mKIAA2000 1152 ATALVNLAVLHSQMKKHSEALPLYER 1177 TPR_2: domain 7 of 8, from 1152 to 1185: score 29.2, E = 9.6e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a al nl++++ +++++ eAl +ye+Al+++++ mKIAA2000 1152 ATALVNLAVLHSQMKKHSEALPLYERALKIYEDS 1185 TPR_1: domain 7 of 8, from 1152 to 1185: score 35.1, E = 1.6e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a a+ nl++++ +++k+ eA+ ye+AL++ ++ mKIAA2000 1152 ATALVNLAVLHSQMKKHSEALPLYERALKIYEDS 1185 TPR_4: domain 5 of 5, from 1194 to 1219: score 3.1, E = 69 *->arallaLArallalGdlaeArallrr<-* +++l +LA + ++ G+++ A++l r mKIAA2000 1194 GETLKNLAVLSYEEGNFEKAAELYKR 1219 TPR_2: domain 8 of 8, from 1194 to 1227: score 24.2, E = 0.0031 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* e l nl+++ y+ g++e+A+e+y++A e+ + mKIAA2000 1194 GETLKNLAVLSYEEGNFEKAAELYKRAMEIKEAE 1227 TPR_3: domain 5 of 5, from 1194 to 1227: score 10.4, E = 3.3 *->leylyslWLAavfynkgkyqeAeelfsYallaildken<-* e l+ l A y+ g++++A+el Y+ + ++ + mKIAA2000 1194 GETLKNL--AVLSYEEGNFEKAAEL--YKRAMEIKEAE 1227 TPR_1: domain 8 of 8, from 1194 to 1227: score 22.1, E = 0.013 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* e+++nl+++ ++ g++++A e y++A e+ + mKIAA2000 1194 GETLKNLAVLSYEEGNFEKAAELYKRAMEIKEAE 1227 //