hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/meh/meh02016/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1993  ( 527 res)   meh02016

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac        90.3    2.3e-22   1
ZnF_C2H2 zinc finger                                     72.5    5.1e-17   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      59   153 ..     1   114 []    90.3  2.3e-22
ZnF_C2H2   1/3     399   421 ..     1    23 []    30.4  0.00024
ZnF_C2H2   2/3     427   449 ..     1    23 []    27.0   0.0025
ZnF_C2H2   3/3     455   478 ..     1    23 []    26.4   0.0039

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 59 to 153: score 90.3, E = 2.3e-22
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cD++++++g         + f+a  HkavLaa+   SpyF++    +
   mKIAA1993    59    CDIIVHIQG---------QPFRA--HKAVLAAS---SPYFRDHSALs 91   

                   ......ieldDeallievspeaFralLnflYt.kldlpeedvenveelLe
                   + ++ +i ++        +p++F+ lL+f+Yt++ +l  +   +v ++L 
   mKIAA1993    92 tmsglsISVIK-------NPSVFEQLLSFCYTgRMSLQLK---DVVSFLT 131  

                   lAdfldSYGqip.lvelCeefllknl<-*
                   +A+fl    q++ ++++C+++l++     
   mKIAA1993   132 AASFL----QMQcVIDKCTQILESIH    153  

ZnF_C2H2: domain 1 of 3, from 399 to 421: score 30.4, E = 0.00024
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C + Cgksf++k++L rHmr H   
   mKIAA1993   399    LICIY-CGKSFNQKgSLDRHMRLH    421  

ZnF_C2H2: domain 2 of 3, from 427 to 449: score 27.0, E = 0.0025
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk++++k++L+ H+r H   
   mKIAA1993   427    FVCKF-CGKKYTRKdQLEYHIRGH    449  

ZnF_C2H2: domain 3 of 3, from 455 to 478: score 26.4, E = 0.0039
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ Cgk+f+ ++ L++H+r+ H   
   mKIAA1993   455    FRCEV-CGKCFPFQgTLNQHLRkNH    478  

//