hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/meh/meh02016/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1993 ( 527 res) meh02016 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- BTB BTB/POZ domain 119.7 5.5e-32 1 zf-C2H2 Zinc finger, C2H2 type 78.5 1.4e-19 3 FYVE FYVE zinc finger -17.9 0.58 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 49 153 .. 1 135 [] 119.7 5.5e-32 zf-C2H2 1/3 399 421 .. 1 24 [] 27.4 0.00034 FYVE 1/1 390 438 .. 1 77 [] -17.9 0.58 zf-C2H2 2/3 427 449 .. 1 24 [] 32.3 1.1e-05 zf-C2H2 3/3 455 478 .. 1 24 [] 31.6 1.8e-05 Alignments of top-scoring domains: BTB: domain 1 of 1, from 49 to 153: score 119.7, E = 5.5e-32 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal lnelr+qg+lcD++++++ g+ f+AHKavLaa+SpYF++ mKIAA1993 49 LNELRLQGKLCDIIVHIQ--------GQPFRAHKAVLAASSPYFRDH 87 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks t++ s+s +i +p++fe+lL+f+Ytg+ s+ mKIAA1993 88 SALS-----TMSGLSIS-VIK----NPSVFEQLLSFCYTGRMSLQ----- 122 PssckseenvedlLalAadllqipslvdkCeefliksl<-* +++v+++L +A ++lq+++++dkC++ l + mKIAA1993 123 ------LKDVVSFLTAA-SFLQMQCVIDKCTQILESIH 153 zf-C2H2: domain 1 of 3, from 399 to 421: score 27.4, E = 0.00034 *->ykCpfdCgksFsrksnLkrHlrtH<-* C +CgksF++k++L rH+r H mKIAA1993 399 LICI-YCGKSFNQKGSLDRHMRLH 421 FYVE: domain 1 of 1, from 390 to 438: score -17.9, E = 0.58 *->phWvpDeevsnCmrCgkpFtk..ltkRrHHCRaCGrifCgsCssktv +W p +e+ +C +Cgk+F++++ ++R + + + mKIAA1993 390 GYWYPYNERLICIYCGKSFNQkgSLDR--------------HMRLHM 422 llpylgiaallkndviekpvRVCdsCydrlnk<-* ++++ VC+ C + + mKIAA1993 423 GITPF----------------VCKFCGKKYTR 438 zf-C2H2: domain 2 of 3, from 427 to 449: score 32.3, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ Cgk+++rk++L+ H+r H mKIAA1993 427 FVCK-FCGKKYTRKDQLEYHIRGH 449 zf-C2H2: domain 3 of 3, from 455 to 478: score 31.6, E = 1.8e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ +Cgk+F +++L++Hlr++H mKIAA1993 455 FRCE-VCGKCFPFQGTLNQHLRKnH 478 //