hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm01240/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1992  ( 215 res)   mpm01240

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR_1    Tetratricopeptide repeat                        28.7    0.00014   2
TPR_2    Tetratricopeptide repeat                        24.4     0.0026   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR_1      1/2      96   129 ..     1    34 []    15.8     0.46
TPR_2      1/3      96   129 ..     1    34 []    11.0       11
TPR_2      2/3     130   163 ..     1    34 []     2.0  1.3e+02
TPR_1      2/2     165   198 ..     1    34 []    14.0     0.78
TPR_2      3/3     165   198 ..     1    34 []    15.5      1.3

Alignments of top-scoring domains:
TPR_1: domain 1 of 2, from 96 to 129: score 15.8, E = 0.46
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       + +  l+ +y +  kyd A+e ++++L +++++   
   mKIAA1992    96    EKSWLLLADIYIQSAKYDMAEELLKRCLCHNRSC    129  

TPR_2: domain 1 of 3, from 96 to 129: score 11.0, E = 11
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                       + + +l+++y++  +y+ A+e+++++l  + ++   
   mKIAA1992    96    EKSWLLLADIYIQSAKYDMAEELLKRCLCHNRSC    129  

TPR_2: domain 2 of 3, from 130 to 163: score 2.0, E = 1.3e+02
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                       +a+ ++G + +k + y +A+  ye A +   +    
   mKIAA1992   130    CKAYEYMGYIMEKEQAYTDAAFNYEMAWKHSNQT    163  

TPR_1: domain 2 of 2, from 165 to 198: score 14.0, E = 0.78
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      + + y l+  ylk ++y +Ai+ + ++Le  P++   
   mKIAA1992   165    PAVGYKLAFNYLKAKRYVDAIDVCHQVLEAHPTY    198  

TPR_2: domain 3 of 3, from 165 to 198: score 15.5, E = 1.3
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      +++ y l+  y+k+++y +A++ + ++le  P++   
   mKIAA1992   165    PAVGYKLAFNYLKAKRYVDAIDVCHQVLEAHPTY    198  

//