hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg13915/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1990  ( 885 res)   mbg13915

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GCV_T    Glycine cleavage T-protein (aminomethyl tran   425.9   3.6e-124   1
DAO      FAD dependent oxidoreductase                   314.2    1.5e-90   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DAO        1/1      50   408 ..     1   402 []   314.2  1.5e-90
GCV_T      1/1     529   869 ..     1   353 []   425.9 3.6e-124

Alignments of top-scoring domains:
DAO: domain 1 of 1, from 50 to 408: score 314.2, E = 1.5e-90
                   *->DVvVIGGGivGlstAyhLakrGl.sVtllErgdigsGaSgrnaGllh
                       Vv+ GGGi+G s+AyhL+k G+++++llE+g++++G++   aG+l+
   mKIAA1990    50    QVVICGGGIMGTSVAYHLSKMGWqDIVLLEQGRLAAGSTRFCAGILS 96   

                   pglryleqgrWllldlvreagkera.llarla.esrdlwreleleelgid
                                         + +++++++a++s++l+++l ++e+gi+
   mKIAA1990    97 TA--------------------RHSsVEQKMAnYSNKLYHQL-EQETGIQ 125  

                   cdfrrtGglylardeeeld.lerlaaalralGlpedvelLdaeelreleP
                   +++ rtG++ la ++++l +l+r+  +l+  G+  ++e+++++ ++el P
   mKIAA1990   126 TGYLRTGSISLAQTQDRLIsLKRINSRLNVVGI--PSEIISPKKVAELHP 173  

                   gls.pglvgalfypddghvdParlvraLaraAealGveilegteVtgler
                   +l+ ++lvga+++p+d++v  a +++aLa aA ++Gv+i+ +t V+++ +
   mKIAA1990   174 LLNvHDLVGAMYVPEDAVVSSADVALALASAASQNGVQIYDRTSVLHVLI 223  

                   egggrvv.VeTedGeirAfiAdkVVnAaGawsdelarllgl.l.prIvPY
                   + g+ v++VeT++G+i++    + Vn+aG w+ e    lgl+ +++    
   mKIAA1990   224 KKGQ-VTgVETDKGQIEC---QYFVNCAGQWAYE----LGLsNeEP---- 261  

                   fLkplrd.iplrPvrGqvlvteplpealapallppdeavgdsrgvyiipr
                          +ipl+++ +++l+t+p +++l  +   +++ v  + ++yi+ +
   mKIAA1990   262 ------LsIPLHACEHFYLLTRPWDTPL-QSN--TPTIVDADGRIYIRNW 302  

                   eGgvliGattd.grldfgggpeevsg.didvdlarleellerarrlfPqL
                   +Gg+l G+   +   +f  g +  + + ++ d++++e ll+ ++r++P+L
   mKIAA1990   303 QGGILSGGFEKnPKPIFTEGKNQLEIqNLREDWDHFEPLLSSLLRRMPAL 352  

                   adadilrawaGlRpltpDglPiigtpDtskPviGrvpglpglyvatGhgg
                   + ++il    ++  +tpD+            ++G++p + g++v++G ++
   mKIAA1990   353 ETLEILKLVNCPETFTPDMK----------CIMGESPVVQGYFVLAGMNS 392  

                   hGltlapaiGkllAel<-*
                    Gl l+ ++Gk lAe+   
   mKIAA1990   393 AGLSLGGGAGKFLAEW    408  

GCV_T: domain 1 of 1, from 529 to 869: score 425.9, E = 3.6e-124
                   *->lfDvSHmgkikv..rGaDavaFLQsLtTNDvakLqpGdkgtytvlLN
                      ++D+S+++k++++++G++a++ LQ+L+ ND++ +++G ++++t++LN
   mKIAA1990   529    VIDMSSFTKFEItsTGDEALESLQYLFCNDLD-VPVG-HIVHTGMLN 573  

                   eqGgilDDlivyrtgeddefylvtnagnrekdlawLkkykeraaekdagk
                   e Gg+ +D+ + r+++ + f+++++++++++++awL+ky+++      ++
   mKIAA1990   574 EYGGYENDCSIARLTK-RSFFMISPTDQQVHCWAWLNKYLPK------DS 616  

                   dvkienlsdelallAvQGPkaedvLqkLftpeytDlskdslkffgttraa
                   ++ +e++++++++l+++GP+a dvL++L++++   +++d+++ +++++++
   mKIAA1990   617 NLLLEDVTWKYTALNLIGPRAVDVLSELSYAP---MTPDHFPTLFCKEMS 663  

                   dlsGfskarvsRtGYTGEdGfEisvpsEkAvhlweallaagqeygvkPcG
                   + ++ +++rv+++++TGE+Gf++++p E+A+h+++++++ gq+yg++++G
   mKIAA1990   664 VGYA-NGIRVMSMTHTGEPGFMLYIPIEYALHVYNEVMSVGQKYGIRNAG 712  

                   LgArdtLRlEaGmcLyGqdldegdttPlEAgldwtvkglrfrafkkgdFv
                   ++A+++LR+E++++++Gqdl++  ttPlE+g++  v +l+    k  dF+
   mKIAA1990   713 YYALRSLRIEKFFAFWGQDLNT-LTTPLECGGESRV-KLE----KGIDFI 756  

                   GkeallrqkanGvkRrrLVglilmaekgvlsediepragleVltpvkgek
                   G++all+qk++Gv++r L ++il +++++  +d++p++g++++  ++g++
   mKIAA1990   757 GRDALLQQKQTGVYKR-LAMFILDDHDTD--LDLWPWWGEPIY--RNGKY 801  

                   vGkvTSGtfSPtLgklnIalayVkselstkiGte............leVe
                    Gk+TS+++S+tL++ +++l+yV +++s++ G+e+  +++  +++++e++
   mKIAA1990   802 AGKTTSSAYSYTLER-HVCLGYV-HNFSEDSGEEqvvttdfinrgeYEID 849  

                   vrgkqvpakvvkspmPFvpt<-*
                   + g++++ak +++p+ +  t   
   mKIAA1990   850 IAGHRFQAKAKLYPVTSFFT    869  

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