hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/msj/msj02270/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1988 ( 691 res) msj02270 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- WD40 WD40 repeats 139.5 3.6e-37 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WD40 1/10 10 49 .. 1 46 [] 16.8 1.1 WD40 2/10 53 92 .. 1 46 [] 8.1 26 WD40 3/10 95 134 .. 1 46 [] 31.8 9.6e-05 WD40 4/10 139 177 .. 1 46 [] 23.7 0.026 WD40 5/10 190 227 .. 1 46 [] 9.8 14 WD40 6/10 230 269 .. 1 46 [] 5.7 61 WD40 7/10 281 318 .. 1 46 [] 9.8 14 WD40 8/10 431 470 .. 1 46 [] 9.7 14 WD40 9/10 475 517 .. 1 46 [] 18.0 0.7 WD40 10/10 520 559 .. 1 46 [] 13.3 3.8 Alignments of top-scoring domains: WD40: domain 1 of 10, from 10 to 49: score 16.8, E = 1.1 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + +r ++ + ++++va++ + n+la++ +Dgt+ ++ mKIAA1988 10 KvHRVRFFNYVPS--GIRCVAYNNQS------NRLAVSRtDGTVEIY 48 d<-* + mKIAA1988 49 N 49 WD40: domain 2 of 10, from 53 to 92: score 8.1, E = 26 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + + ++gH++ + ++++ ++l+s++ +g i + mKIAA1988 53 NyFQEKFFPGHES-RGTEALCWAGG-------QRLFSAGlNGEILEY 91 d<-* d mKIAA1988 92 D 92 WD40: domain 3 of 10, from 95 to 134: score 31.8, E = 9.6e-05 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + +tl++ g p++s++ sp+g ++l++g++Dg+++l+ mKIAA1988 95 AlNIKYTLDAFGG--PIWSMTASPSG------SQLLVGCeDGSVKLF 133 d<-* + mKIAA1988 134 E 134 WD40: domain 4 of 10, from 139 to 177: score 23.7, E = 0.026 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + r ++ ++ +++s++++p g +++a+gs D i ++ mKIAA1988 139 KiQFARNFDRQKS--RILSLCWHPAG------THVAAGSlDY-ISVF 176 d<-* d mKIAA1988 177 D 177 WD40: domain 5 of 10, from 190 to 227: score 9.8, E = 14 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +++ l + k + V++vaf +dg ++s ++ g++ lW mKIAA1988 190 DrQHLGVTK-SRC--IVWGVAFLSDG-------TVISVDsVGKVQLW 226 d<-* d mKIAA1988 227 D 227 WD40: domain 6 of 10, from 230 to 269: score 5.7, E = 61 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t++l+++ ++ +V s+a+ + + +++g gt+ + mKIAA1988 230 TgTLVKSHLVANA--DVQSIAVADQE------DSFVVGTaEGTVFHF 268 d<-* mKIAA1988 269 Q 269 WD40: domain 7 of 10, from 281 to 318: score 9.8, E = 14 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ ++ ++ Ht+ +V++va sp+ l+sg++D ++ + mKIAA1988 281 QwVRTKPFQHHTH--DVRAVAHSPT--------ALISGGtDTHLVIR 317 d<-* mKIAA1988 318 P 318 WD40: domain 8 of 10, from 431 to 470: score 9.7, E = 14 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + +++l+ + +++ fs d+ + l+++s+ g++++ mKIAA1988 431 SlQRVSKLPSFLR--SALHILFSEDS------TKLLVASnQGSLHIV 469 d<-* + mKIAA1988 470 H 470 WD40: domain 9 of 10, from 475 to 517: score 18.0, E = 0.7 *->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti + k l+t+++++g + + +a+spdg n+la++++ + mKIAA1988 475 SfKHLHTFQpqsGTVE--AMCLLAVSPDG------NWLAASGtSAGV 513 rlWd<-* +++d mKIAA1988 514 HVYD 517 WD40: domain 10 of 10, from 520 to 559: score 13.3, E = 3.8 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW kl +t ++ + pVt++a+ p+ n l+ + +D ++ + mKIAA1988 520 HlKLHCTVPAYNF--PVTALAIAPNT------NNLVIAHsDQQVFEF 558 d<-* + mKIAA1988 559 S 559 [output cut off at A = 10 top alignments] //