hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msj/msj02270/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1988  ( 691 res)   msj02270

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        86.6      5e-22   9

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/9      12    49 ..     1    38 []    12.3      6.2
WD40       2/9      56    92 ..     1    38 []     1.4  1.4e+02
WD40       3/9      97   134 ..     1    38 []    28.3  0.00018
WD40       4/9     141   177 ..     1    38 []    15.5      1.2
WD40       5/9     192   227 ..     1    38 []    -0.1  2.1e+02
WD40       6/9     233   269 ..     1    38 []     1.2  1.5e+02
WD40       7/9     283   318 ..     1    38 []    12.9      5.2
WD40       8/9     477   517 ..     1    38 []     8.4       18
WD40       9/9     522   559 ..     1    38 []     7.7       23

Alignments of top-scoring domains:
WD40: domain 1 of 9, from 12 to 49: score 12.3, E = 6.2
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++ ++   s+++cva++   +++la +  Dgt+ i++   
   mKIAA1988    12    HRVRFFnYVPSGIRCVAYNNQ-SNRLAVSRTDGTVEIYN    49   

WD40: domain 2 of 9, from 56 to 92: score 1.4, E = 1.4e+02
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + +   ++ + + ++++++    ++l+s++ +g i  +d   
   mKIAA1988    56    QEKFFPgHESRGTEALCWAGG--QRLFSAGLNGEILEYD    92   

WD40: domain 3 of 9, from 97 to 134: score 28.3, E = 0.00018
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + +++l++  +p++++  sp+ g++l+ g++Dg++k+++   
   mKIAA1988    97    NIKYTLdAFGGPIWSMTASPS-GSQLLVGCEDGSVKLFE    134  

WD40: domain 4 of 9, from 141 to 177: score 15.5, E = 1.2
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  + ++  +s + +++++p  g+++a gS    i ++d   
   mKIAA1988   141    QFARNFdRQKSRILSLCWHPA-GTHVAAGSL-DYISVFD    177  

WD40: domain 5 of 9, from 192 to 227: score -0.1, E = 2.1e+02
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + l v +     V+ vaf  d   +++s  + g++ +Wd   
   mKIAA1988   192    QHLGVTkSR-CIVWGVAFLSD--GTVISVDSVGKVQLWD    227  

WD40: domain 6 of 9, from 233 to 269: score 1.2, E = 1.5e+02
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++++l +  + V ++a++      ++ g + gt+  +    
   mKIAA1988   233    LVKSHLvAN-ADVQSIAVADQ-EDSFVVGTAEGTVFHFQ    269  

WD40: domain 7 of 9, from 283 to 318: score 12.9, E = 5.2
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++ +++Ht+ V++va sp     l+sg+ D ++ i     
   mKIAA1988   283    VRTKPFqHHTHDVRAVAHSPT---ALISGGTDTHLVIRP    318  

WD40: domain 8 of 9, from 477 to 517: score 8.4, E = 18
                   *->eclavl.gHtspVtcvafspd..sgpllasgSrDgtikiWd<-*
                      + l++++  +++V++++    +++g++la ++    ++++d   
   mKIAA1988   477    KHLHTFqPQSGTVEAMCLLAVspDGNWLAASGTSAGVHVYD    517  

WD40: domain 9 of 9, from 522 to 559: score 7.7, E = 23
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++  + ++ + pVt++a++p+  + l+ + +D  +  ++   
   mKIAA1988   522    KLHCTVpAYNFPVTALAIAPN-TNNLVIAHSDQQVFEFS    559  

//