hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph02350/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1986  ( 767 res)   mph02350

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_RI   Leucine rich repeat, ribonuclease inhibitor    120.6    1.8e-31   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_RI     1/7     279   306 ..     1    28 []     0.8  2.1e+02
LRR_RI     2/7     307   335 ..     1    28 []    19.7     0.41
LRR_RI     3/7     336   363 ..     1    28 []    38.4  9.6e-07
LRR_RI     4/7     365   392 ..     1    28 []     6.2       36
LRR_RI     5/7     393   420 ..     1    28 []    31.0  0.00016
LRR_RI     6/7     421   448 ..     1    28 []    24.2    0.018
LRR_RI     7/7     449   476 ..     1    28 []    23.6    0.028

Alignments of top-scoring domains:
LRR_RI: domain 1 of 7, from 279 to 306: score 0.8, E = 2.1e+02
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                       +sL +L+L+n  l     + La aLk    
   mKIAA1986   279    RSSLAVLHLENASLSGRPLMLLATALKM    306  

LRR_RI: domain 2 of 7, from 307 to 335: score 19.7, E = 0.41
                   *->npsLreLdLsnNkl.gdeGaraLaeaLks<-*
                      n++LreL+L++Nkl+g    ++L ++Lk    
   mKIAA1986   307    NMNLRELYLADNKLnGLQDSAQLGNLLKF    335  

LRR_RI: domain 3 of 7, from 336 to 363: score 38.4, E = 9.6e-07
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n+sL+ LdL+nN++ d+G + ++e+Lk+   
   mKIAA1986   336    NCSLQILDLRNNHVLDSGLAYICEGLKE    363  

LRR_RI: domain 4 of 7, from 365 to 392: score 6.2, E = 36
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                       + L +L L+nN l+  G++ L  aL +   
   mKIAA1986   365    RKGLVTLVLWNNQLTHTGMAFLGMALPH    392  

LRR_RI: domain 5 of 7, from 393 to 420: score 31.0, E = 0.00016
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      ++sL++L+L++N++g eG+r L+++L s   
   mKIAA1986   393    TQSLETLNLGHNPIGNEGVRNLKNGLIS    420  

LRR_RI: domain 6 of 7, from 421 to 448: score 24.2, E = 0.018
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n+s ++L L++ kl++eGa a ae +++   
   mKIAA1986   421    NRSVLRLGLASTKLTCEGAVAVAEFIAE    448  

LRR_RI: domain 7 of 7, from 449 to 476: score 23.6, E = 0.028
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      +p+L++LdL+ N +   G +aL+ aLk    
   mKIAA1986   449    SPRLLRLDLRENEIKTGGLMALSLALKV    476  

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