hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02350/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1986  ( 767 res)   mph02350

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_1    Leucine Rich Repeat                             21.9      0.016   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_1      1/7     253   277 ..     1    25 []     1.6  1.1e+03
LRR_1      2/7     281   305 ..     1    25 []     1.2  1.3e+03
LRR_1      3/7     309   333 ..     1    25 []    10.2       41
LRR_1      4/7     338   362 ..     1    25 []     9.2       60
LRR_1      5/7     367   389 ..     1    25 []     4.6  3.4e+02
LRR_1      6/7     395   423 ..     1    25 []     7.7  1.1e+02
LRR_1      7/7     451   475 ..     1    25 []     2.5  7.8e+02

Alignments of top-scoring domains:
LRR_1: domain 1 of 7, from 253 to 277: score 1.6, E = 1.1e+03
                   *->nLeeLdLsgCNpslsgs..lppsl.glp<-*
                       L++Ld ++ + +l  +++ p   + l+   
   mKIAA1986   253    CLQYLDARN-T-PLL-DhsAPFVArALR    277  

LRR_1: domain 2 of 7, from 281 to 305: score 1.2, E = 1.3e+03
                   *->nLeeLdLsgCNpslsgs.lppsl.glp<-*
                      +L +L+L++   slsg +l      l+   
   mKIAA1986   281    SLAVLHLEN-A-SLSGRpLMLLAtALK    305  

LRR_1: domain 3 of 7, from 309 to 333: score 10.2, E = 41
                   *->nLeeLdLsgCNpslsgslpps.l.glp<-*
                      nL+eL+L + N +l+g   +  l++l    
   mKIAA1986   309    NLRELYLAD-N-KLNGLQDSAqLgNLL    333  

LRR_1: domain 4 of 7, from 338 to 362: score 9.2, E = 60
                   *->nLeeLdLsgCNpslsgs.lppsl.glp<-*
                      +L++LdL++ N ++ +s+l+  ++gl+   
   mKIAA1986   338    SLQILDLRN-N-HVLDSgLAYICeGLK    362  

LRR_1: domain 5 of 7, from 367 to 389: score 4.6, E = 3.4e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                       L +L L + N +l+ +    + g+    
   mKIAA1986   367    GLVTLVLWN-N-QLT-HTGMAFlGMA    389  

LRR_1: domain 6 of 7, from 395 to 423: score 7.7, E = 1.1e+02
                   *->nLeeLdLsgCNpslsgs.....lpps.l.glp<-*
                      +Le+L+L++ N ++ g ++  +l ++ +++ +   
   mKIAA1986   395    SLETLNLGH-N-PI-GNegvrnLKNGlIsNRS    423  

LRR_1: domain 7 of 7, from 451 to 475: score 2.5, E = 7.8e+02
                   *->nLeeLdLsgCNpslsgs..lppsl.glp<-*
                      +L  LdL+  N ++ ++++l +    l+   
   mKIAA1986   451    RLLRLDLRE-N-EI-KTggLMALSlALK    475  

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