hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msh/msh05001/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1985  ( 947 res)   msh05001

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR      Tetratricopeptide repeats                       49.1    5.8e-10   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR        1/6     187   220 ..     1    34 []     8.4       56
TPR        2/6     495   528 ..     1    34 []    15.6      7.1
TPR        3/6     535   568 ..     1    34 []     3.3  2.1e+02
TPR        4/6     703   736 ..     1    34 []     3.4  2.1e+02
TPR        5/6     825   858 ..     1    34 []    23.6    0.028
TPR        6/6     869   903 ..     1    34 []     0.0    5e+02

Alignments of top-scoring domains:
TPR: domain 1 of 6, from 187 to 220: score 8.4, E = 56
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ ++ lG +  ++ ++ +A  y+e+A+++       
   mKIAA1985   187    ARLCFLLGRLSIRKTKLSQARVYFEEAIRVLDGA    220  

TPR: domain 2 of 6, from 495 to 528: score 15.6, E = 7.1
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                        +++ lG+a++  g+   A + y +AL  +++    
   mKIAA1985   495    GVVHNLLGLAFEDEGRTSRAAKSYLRALIRAREM    528  

TPR: domain 3 of 6, from 535 to 568: score 3.3, E = 2.1e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a    nlG++ lk    + A  y+ +A++l  +    
   mKIAA1985   535    AVSMANLGHLTLKSCMQQSARGYLLQAVRLYSEL    568  

TPR: domain 4 of 6, from 703 to 736: score 3.4, E = 2.1e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      aea++  G +++++ + +  + y+++A++ +      
   mKIAA1985   703    AEAWLGAGRLHYLMQEDELVELYLQEAIQTALRS    736  

TPR: domain 5 of 6, from 825 to 858: score 23.6, E = 0.028
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                        a+ +l+ +y++l+ y++A+++y k L+l P     
   mKIAA1985   825    LVAFHRLATVYFSLNMYEMAEDCYLKTLSLCPPW    858  

TPR: domain 6 of 6, from 869 to 903: score 0.0, E = 5e+02
                   *->aealynlGna.ylklgdydeAieyyekALeldPnn<-*
                      a+++++lG +++++l+d  +A ey+  AL+ +      
   mKIAA1985   869    AKVYCRLGRLtFYQLKDAHDATEYFLLALAAAVLM    903  

//