hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh05001/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1985  ( 947 res)   msh05001

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR_2    Tetratricopeptide repeat                        58.6    1.3e-13   5
TPR_1    Tetratricopeptide repeat                        40.9    2.9e-08   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR_1      1/4     187   220 ..     1    34 []     2.7       17
TPR_2      1/5     187   220 ..     1    34 []    17.9     0.24
TPR_1      2/4     495   528 ..     1    34 []    13.6     0.85
TPR_2      2/5     495   528 ..     1    34 []    12.8        7
TPR_2      3/5     535   568 ..     1    34 []     4.2       70
TPR_1      3/4     703   736 ..     1    34 []     5.6      7.8
TPR_2      4/5     703   736 ..     1    34 []     7.6       28
TPR_1      4/4     825   858 ..     1    34 []    19.0     0.11
TPR_2      5/5     825   858 ..     1    34 []    19.6    0.077

Alignments of top-scoring domains:
TPR_1: domain 1 of 4, from 187 to 220: score 2.7, E = 17
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a+ ++ lG +  ++ k+ +A  ++e+A+++       
   mKIAA1985   187    ARLCFLLGRLSIRKTKLSQARVYFEEAIRVLDGA    220  

TPR_2: domain 1 of 5, from 187 to 220: score 17.9, E = 0.24
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      a+++++lG++ +++ ++ +A+ ++e+A++   ++   
   mKIAA1985   187    ARLCFLLGRLSIRKTKLSQARVYFEEAIRVLDGA    220  

TPR_1: domain 2 of 4, from 495 to 528: score 13.6, E = 0.85
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                        +++ lG+a++  g+   A + y +AL   ++    
   mKIAA1985   495    GVVHNLLGLAFEDEGRTSRAAKSYLRALIRAREM    528  

TPR_2: domain 2 of 5, from 495 to 528: score 12.8, E = 7
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                        ++++lGla +  g+  +A++ y +Al  + +    
   mKIAA1985   495    GVVHNLLGLAFEDEGRTSRAAKSYLRALIRAREM    528  

TPR_2: domain 3 of 5, from 535 to 568: score 4.2, E = 70
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      a    nlG + +k    + A+ ++ +A++l+ +    
   mKIAA1985   535    AVSMANLGHLTLKSCMQQSARGYLLQAVRLYSEL    568  

TPR_1: domain 3 of 4, from 703 to 736: score 5.6, E = 7.8
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      aea+   G +++ +++ +  + ++++A++        
   mKIAA1985   703    AEAWLGAGRLHYLMQEDELVELYLQEAIQTALRS    736  

TPR_2: domain 4 of 5, from 703 to 736: score 7.6, E = 28
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      aea+   G+++y +++ e  + ++++A++ + +    
   mKIAA1985   703    AEAWLGAGRLHYLMQEDELVELYLQEAIQTALRS    736  

TPR_1: domain 4 of 4, from 825 to 858: score 19.0, E = 0.11
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                        a+ +l+ +y++l+ y+ A+++y k L+l P     
   mKIAA1985   825    LVAFHRLATVYFSLNMYEMAEDCYLKTLSLCPPW    858  

TPR_2: domain 5 of 5, from 825 to 858: score 19.6, E = 0.077
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                        a ++l+ +y+ l+ ye A+++y k l+l P +   
   mKIAA1985   825    LVAFHRLATVYFSLNMYEMAEDCYLKTLSLCPPW    858  

//