hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp99003/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1983  ( 426 res)   mbp99003

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
EGF_CA   Calcium-binding EGF-like domain                 59.3    4.9e-13   2
EGF      Epidermal growth factor-like domain.            43.8    2.4e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EGF        1/2     111   152 ..     1    32 []    15.0       11
EGF_CA     1/2     108   152 ..     1    34 []    10.2    0.092
EGF        2/2     156   194 ..     1    32 []    36.7  3.2e-06
EGF_CA     2/2     153   194 ..     1    34 []    57.1  2.2e-12

Alignments of top-scoring domains:
EGF: domain 1 of 2, from 111 to 152: score 15.0, E = 11
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg...........
                       Ca+ pC++       +C+++ +   C+C  pGy+ +++++++++++
   mKIAA1983   111    ICAqaPCEQ-------QCTdnfgRVLCtCY-PGYRYdrerhqkrerp 149  

                   rCe<-*
                   +C    
   mKIAA1983   150 YCL    152  

EGF_CA: domain 1 of 2, from 108 to 152: score 10.2, E = 0.092
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt...........r
                      D D C + pC +     +C+++ G   C+C pGy+ ++ +++++ ++
   mKIAA1983   108    DYDICaqaPCEQ-----QCTDnFGRVLCtCYPGYRydrerhqkrerP 149  

                   nCe<-*
                    C    
   mKIAA1983   150 YCL    152  

EGF: domain 2 of 2, from 156 to 194: score 36.7, E = 3.2e-06
                   *->eCa.....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe
                      eCa+++++ C +       +Ci++ +sy+C+C+ +Gy++++++++C 
   mKIAA1983   156    ECAtsnttLCAH-------ICIntmgSYHCeCR-EGYILeddgrTCT 194  

                   <-*
                      
   mKIAA1983     -     -    

EGF_CA: domain 2 of 2, from 153 to 194: score 57.1, E = 2.2e-12
                   *->DiDEC......pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe
                      DiDEC ++++++C +     +CiN+ GSY+C+C++Gy   +++r+C+
   mKIAA1983   153    DIDECatsnttLCAH-----ICINtMGSYHCeCREGYIleddgRTCT 194  

                   <-*
                      
   mKIAA1983     -     -    

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