hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp99003/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1983  ( 426 res)   mbp99003

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
EGF_CA   Calcium binding EGF domain                      43.0    6.7e-09   1
EGF      EGF-like domain                                 28.6    0.00014   2
Collagen Collagen triple helix repeat (20 copies)        12.4    0.00037   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EGF        1/2     112   151 ..     1    39 []     5.9        5
EGF        2/2     157   193 ..     1    39 []    30.6  3.6e-05
EGF_CA     1/1     153   193 ..     1    55 []    43.0  6.7e-09
Collagen   1/1     255   314 ..     1    60 []    12.4  0.00037

Alignments of top-scoring domains:
EGF: domain 1 of 2, from 112 to 151: score 5.9, E = 5
                   *->CspnngpCsngGtCvdtpggytCeCppGdyfll......ytGkrC<-
                      C++   pC    +C+d  g   C C pG y+++++++++   ++C  
   mKIAA1983   112    CAQA--PCEQ--QCTDNFGRVLCTCYPG-YRYDrerhqkRERPYC   151  

                   *
                    
   mKIAA1983     -   -    

EGF: domain 2 of 2, from 157 to 193: score 30.6, E = 3.6e-05
                   *->Cspnn.gpCsngGtCvdtpggytCeCppGdyfllytGkrC<-*
                      C+  n+  C +  +C++t g+y+CeC +G y l+ +G++C   
   mKIAA1983   157    CATSNtTLCAH--ICINTMGSYHCECREG-YILEDDGRTC    193  

EGF_CA: domain 1 of 1, from 153 to 193: score 43.0, E = 6.7e-09
                   *->DvDECat.gtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvs
                      D+DECat+ t   C     + +C+Nt GS+ C+    C+eGY     
   mKIAA1983   153    DIDECATsNT-TLC-----AHICINTMGSYHCE----CREGYI---- 185  

                   ennedgtnC<-*
                      +dg +C   
   mKIAA1983   186 -LEDDGRTC    193  

Collagen: domain 1 of 1, from 255 to 314: score 12.4, E = 0.00037
                   *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
                      G + ++  + +pGppG pG +Gp+G+pGp+G pG+pG PGppG+pGp
   mKIAA1983   255    GDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGP 301  

                   pGppGapGapGpp<-*
                   +G  G+ G+       
   mKIAA1983   302 RGSMGPMGPSPDL    314  

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