hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mic/mic06024/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1981  ( 296 res)   mic06024

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                124.0    1.6e-32   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/5      81   110 ..     1    30 []    22.7    0.052
ANK        2/5     114   143 ..     1    30 []    31.3  0.00013
ANK        3/5     147   178 ..     1    30 []    18.9     0.73
ANK        4/5     180   209 ..     1    30 []    22.7    0.053
ANK        5/5     213   242 ..     1    30 []    28.9   0.0007

Alignments of top-scoring domains:
ANK: domain 1 of 5, from 81 to 110: score 22.7, E = 0.052
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G++++HlAa++g   +++ +l  gad+     
   mKIAA1981    81    EGKSAFHLAAMRGAAGCLEVMLAQGADVMS    110  

ANK: domain 2 of 5, from 114 to 143: score 31.3, E = 0.00013
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+++LHlAa++g++e++k Ll+++  +++   
   mKIAA1981   114    AGYNALHLAAKYGHPECLKQLLEASCVVDI    143  

ANK: domain 3 of 5, from 147 to 178: score 18.9, E = 0.73
                   *->dGrTpLHlAaengnlevvklLldkga..dina<-*
                       G+T+LH+Aa+ g l++ klL + +a+ ++ +   
   mKIAA1981   147    SGWTALHHAAAGGCLSCSKLLCSFKAhmNPRD    178  

ANK: domain 4 of 5, from 180 to 209: score 22.7, E = 0.053
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G TpL +Aa+  + ++++lLl+ ga  n+   
   mKIAA1981   180    SGATPLIIAAQMCHTDLCRLLLQQGAATND    209  

ANK: domain 5 of 5, from 213 to 242: score 28.9, E = 0.0007
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +GrT+L+lA+e g++e+v+ Ll+ ga + +   
   mKIAA1981   213    QGRTALMLACEGGSPETVEVLLQGGAQLSI    242  

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