hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic06024/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1981  ( 296 res)   mic06024

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                 147.6    2.3e-40   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/5      81   113 ..     1    33 []    25.9  0.00095
Ank        2/5     114   146 ..     1    33 []    30.5  3.8e-05
Ank        3/5     147   179 ..     1    33 []    28.3  0.00018
Ank        4/5     180   212 ..     1    33 []    34.4  2.7e-06
Ank        5/5     213   245 ..     1    33 []    36.4  6.5e-07

Alignments of top-scoring domains:
Ank: domain 1 of 5, from 81 to 113: score 25.9, E = 0.00095
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G ++ HlAa+rg + +++  l qGAd+  +d    
   mKIAA1981    81    EGKSAFHLAAMRGAAGCLEVMLAQGADVMSTDG    113  

Ank: domain 2 of 5, from 114 to 146: score 30.5, E = 3.8e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+ +LHlAa++g++e++k Ll++ + +++ d    
   mKIAA1981   114    AGYNALHLAAKYGHPECLKQLLEASCVVDIEDS    146  

Ank: domain 3 of 5, from 147 to 179: score 28.3, E = 0.00018
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LH+Aa  g+l++ klL s  A  n +d+   
   mKIAA1981   147    SGWTALHHAAAGGCLSCSKLLCSFKAHMNPRDR    179  

Ank: domain 4 of 5, from 180 to 212: score 34.4, E = 2.7e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G TPL +Aa++ ++++++lLl+qGA  n qd    
   mKIAA1981   180    SGATPLIIAAQMCHTDLCRLLLQQGAATNDQDL    212  

Ank: domain 5 of 5, from 213 to 245: score 36.4, E = 6.5e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+L+lA++ g++e v+ Ll+ GA l ++d    
   mKIAA1981   213    QGRTALMLACEGGSPETVEVLLQGGAQLSITDA    245  

//