hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj03167/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1980  ( 736 res)   mfj03167

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TPR_2    Tetratricopeptide repeat                        64.3    2.6e-15   3
TPR_1    Tetratricopeptide repeat                        62.8    7.2e-15   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR_1      1/3     276   309 ..     1    34 []    19.0     0.12
TPR_2      1/3     276   309 ..     1    34 []    23.3   0.0057
TPR_1      2/3     310   343 ..     1    34 []    29.5  7.7e-05
TPR_2      2/3     310   343 ..     1    34 []    26.9  0.00047
TPR_1      3/3     351   384 ..     1    34 []    15.1     0.57
TPR_2      3/3     351   384 ..     1    34 []    14.4      2.7

Alignments of top-scoring domains:
TPR_1: domain 1 of 3, from 276 to 309: score 19.0, E = 0.12
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a  +  +G+ y+k g++ +A   y+kALe+d +n   
   mKIAA1980   276    ALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQN    309  

TPR_2: domain 1 of 3, from 276 to 309: score 23.3, E = 0.0057
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      a  +  +G+ y+k g++ +A + y+kAle+d++n   
   mKIAA1980   276    ALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQN    309  

TPR_1: domain 2 of 3, from 310 to 343: score 29.5, E = 7.7e-05
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      +ea+  +G++y  +g +++Aie++e ALe  P++   
   mKIAA1980   310    VEALVARGALYATKGSLNKAIEDFELALENCPTH    343  

TPR_2: domain 2 of 3, from 310 to 343: score 26.9, E = 0.00047
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      +eal ++G +y+ +g + +A+e++e Ale  P++   
   mKIAA1980   310    VEALVARGALYATKGSLNKAIEDFELALENCPTH    343  

TPR_1: domain 3 of 3, from 351 to 384: score 15.1, E = 0.57
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       +++  +G  +++ +k+  A+ +y+kAL ld+++   
   mKIAA1980   351    CQTLVERGGQLEEEEKFLNAESYYKKALTLDETF    384  

TPR_2: domain 3 of 3, from 351 to 384: score 14.4, E = 2.7
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                         l  +G  +++ +++  A+ +y+kAl ld++    
   mKIAA1980   351    CQTLVERGGQLEEEEKFLNAESYYKKALTLDETF    384  

//