hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph01546/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1977  ( 649 res)   mph01546

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                133.8    1.8e-35   6
SAM      Sterile alpha motif.                            53.0    3.9e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/6      52    82 ..     1    30 []     9.9  2.2e+02
ANK        2/6      86   115 ..     1    30 []    30.9  0.00017
ANK        3/6     119   148 ..     1    30 []    27.7   0.0016
ANK        4/6     152   181 ..     1    30 []    29.6  0.00044
ANK        5/6     186   215 ..     1    30 []    31.0  0.00017
ANK        6/6     219   248 ..     1    30 []     4.9    1e+03
SAM        1/1     440   506 ..     1    67 []    53.0  3.9e-11

Alignments of top-scoring domains:
ANK: domain 1 of 6, from 52 to 82: score 9.9, E = 2.2e+02
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                      d    LH Aa+ g++evvk+ +++g  d+n+   
   mKIAA1977    52    DVPLDLHTAASIGQHEVVKECVQRGElDLNK    82   

ANK: domain 2 of 6, from 86 to 115: score 30.9, E = 0.00017
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+T+L++A + g+  +v+lLl++g+++n+   
   mKIAA1977    86    GGWTALMYASYIGHDTIVHLLLEAGVSVNV    115  

ANK: domain 3 of 6, from 119 to 148: score 27.7, E = 0.0016
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+TpL+lA + gn++++ +Ll+ ga++++   
   mKIAA1977   119    EGQTPLMLASSCGNESIAYFLLQQGAELEM    148  

ANK: domain 4 of 6, from 152 to 181: score 29.6, E = 0.00044
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+T+L ++ + g+  +vk+Ll++ga+ n+   
   mKIAA1977   152    HGWTALFHCTSAGHQQMVKFLLESGANANV    181  

ANK: domain 5 of 6, from 186 to 215: score 31.0, E = 0.00017
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+TpL+ Aa++g++ +v+++l++g+ ++    
   mKIAA1977   186    YGYTPLMEAAASGHEIIVQYFLNHGVKVDT    215  

ANK: domain 6 of 6, from 219 to 248: score 4.9, E = 1e+03
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G T+ +lA + g++++v l+  +++ + +   
   mKIAA1977   219    SGATACMLARQFGHMKIVALMETHSPVLPK    248  

SAM: domain 1 of 1, from 440 to 506: score 53.0, E = 3.9e-11
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      + + +  ++a  Le ig+ +Y   F+++ id +++l lt e+dLke+
   mKIAA1977   440    PYsGPQQDLATLLEQIGCLKYLQVFEEQDIDLRIFLTLT-ESDLKEI 485  

                   GitllGhRkkIlsaiqklkeq<-*
                   Gitl G+ +k  sai    ++   
   mKIAA1977   486 GITLFGPKRKMTSAIARWHSS    506  

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