hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01546/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1977  ( 649 res)   mph01546

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                 137.2    2.9e-37   4
SAM_1    SAM domain (Sterile alpha motif)                48.4    1.6e-10   1
SAM_2    SAM domain (Sterile alpha motif)                43.6    4.5e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/4      86   118 ..     1    33 []    33.2  5.9e-06
Ank        2/4     119   151 ..     1    33 []    40.9  2.9e-08
Ank        3/4     152   184 ..     1    33 []    27.6  0.00029
Ank        4/4     186   218 ..     1    33 []    35.4  1.3e-06
SAM_1      1/1     444   504 ..     1    66 []    48.4  1.6e-10
SAM_2      1/1     440   506 ..     1    72 []    43.6  4.5e-09

Alignments of top-scoring domains:
Ank: domain 1 of 4, from 86 to 118: score 33.2, E = 5.9e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+L++A++ g+  +v lLl++G ++n+ +    
   mKIAA1977    86    GGWTALMYASYIGHDTIVHLLLEAGVSVNVPTP    118  

Ank: domain 2 of 4, from 119 to 151: score 40.9, E = 2.9e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+TPL+lA+++gn++++ +Ll+qGA+l ++d    
   mKIAA1977   119    EGQTPLMLASSCGNESIAYFLLQQGAELEMKDI    151  

Ank: domain 3 of 4, from 152 to 184: score 27.6, E = 0.00029
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+T+L +  + g+ ++vk+Ll+ GA+ n++     
   mKIAA1977   152    HGWTALFHCTSAGHQQMVKFLLESGANANVREP    184  

Ank: domain 4 of 4, from 186 to 218: score 35.4, E = 1.3e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+TPL+ Aa +g++ +v+++l++G  ++ +d    
   mKIAA1977   186    YGYTPLMEAAASGHEIIVQYFLNHGVKVDTRDH    218  

SAM_1: domain 1 of 1, from 444 to 504: score 48.4, E = 1.6e-10
                   *->dgwsvesVgeWLesigllgqYidnFlaagyidgdtllqlteeDLedl
                      ++   ++++  Le ig   +Y + F + + id++ +l+lte+DL+++
   mKIAA1977   444    PQ---QDLATLLEQIGC-LKYLQVF-EEQDIDLRIFLTLTESDLKEI 485  

                   GvtllGHrkkIlssIqgLk<-*
                   G+tl G+  k+ s+I +++   
   mKIAA1977   486 GITLFGPKRKMTSAIARWH    504  

SAM_2: domain 1 of 1, from 440 to 506: score 43.6, E = 4.5e-09
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                      + s   +++a  Le+ig+  +Y + F++q i+  ++  l lte+dL 
   mKIAA1977   440    PYSGPQQDLATLLEQIGC-LKYLQVFEEQDIDL-RIF-LTLTESDL- 482  

                   klalGitsvghRkkilskiqelkqq<-*
                   k ++Git++g+ +k+ s+i +   +   
   mKIAA1977   483 K-EIGITLFGPKRKMTSAIARWHSS    506  

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