hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03993/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1976  ( 328 res)   mbh03993

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEATH    DEATH domain, found in proteins involved in     81.4    1.1e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEATH      1/1     235   326 ..     1   108 []    81.4  1.1e-19

Alignments of top-scoring domains:
DEATH: domain 1 of 1, from 235 to 326: score 81.4, E = 1.1e-19
                   *->pagaaslteltreklaklldhpldlgddWreLArkLglseaeidqie
                      +++a++++ l+r+k+++ ld+p+++g+dWr+LA+kL+l ++++ +++
   mKIAA1976   235    GPSAFKIPFLIRQKIITSLDPPCSRGADWRTLAQKLHL-DSHLSFFA 280  

                   tesprelnAyyeddlreqsyqlLrlWeqregkneqatlgtLleaLrkmgr
                   ++++             ++ ++L+lWe+r+ +n  ++lg+L++a   +g 
   mKIAA1976   281 SKPS-------------PTAMILNLWEARHFPN--GNLGQLAAAVAGLGQ 315  

                   ddavellrsel<-*
                    da  +  se    
   mKIAA1976   316 PDAGLFTVSEA    326  

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