hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj04206/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1973  ( 1031 res)   mfj04206

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PBPe     Eukaryotic homologues of bacterial periplasm   259.6    2.5e-73   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PBPe       1/1     461   806 ..     1   296 []   259.6  2.5e-73

Alignments of top-scoring domains:
PBPe: domain 1 of 1, from 461 to 806: score 259.6, E = 2.5e-73
                   *->tlkVttrilekPfvmfkknpeglkiDPitgnkcfeGyCIDLlealak
                        +V+         +                kc++GyCIDLle la+
   mKIAA1973   461    NDTVPI-------KFK---------------KCCYGYCIDLLEQLAE 485  

                   ilgFtYelelVpDGkYGskdantgnWnGmIgeLirgeADmAVapLTItae
                   +++F+++l++V+DGkYG+ +++   W+G++g+L++g+A mAV++++I+++
   mKIAA1973   486 DMNFDFDLYIVGDGKYGAWKNG--HWTGLVGDLLSGTANMAVTSFSINTA 533  

                   RervVDFTkPFmelGIsILvkkpdkqksslfsFLePfskkL.........
                   R++v+DFT PF++++++ILv+ +d   +++ +F++P+++    +     +
   mKIAA1973   534 RSQVIDFTSPFFSTSLGILVRTRDT-AAPIGAFMWPLHWTMwlgifvalh 582  

                   ..AAfLTvermesp....................................
                    +A fLT+  + sp + +++++++++  + ++  +       +++   ++
   mKIAA1973   583 itAIFLTLYEWKSPfgmtpkgrnrnkvfsfssalnvcyallfgrtaaikp 632  

                   ........................................IssveDLakr
                   ++  +++   +          ++ + +      +++  +++s+++D++++
   mKIAA1973   633 pkcwtgrflmnlwaifcmfclstytanlaavmvgekiyeeLSGIHDPKLH 682  

                   npQtkieyGTvrgssTeefFkrpSkiptysrmwryMssrskspsvfvksl
                   +p++ +++GTvr ss+e + ++     ++  m++yM      ++++v ++
   mKIAA1973   683 HPSQGFRFGTVRESSAEDYVRQ-----SFPEMHEYM------RRYNVPAT 721  

                   seGvqrvlnsk.GnYAFlmEstyleYeasrDpnCdYKLvtvGevfgskGY
                    +Gvq ++n +++++AF+m+ + l+Ye+s D++C+  L tvG++f+ +GY
   mKIAA1973   722 PDGVQYLKNDPeKLDAFIMDKALLDYEVSIDADCK--LLTVGKPFAIEGY 769  

                   GIAlpkgSPlrdklSrAILkLsEsGeLekLknKWwkk<-*
                   GI+lp +SPl++++S  I ++++ G+++ L++KW+k    
   mKIAA1973   770 GIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYKV    806  

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