hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj00241/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1972  ( 576 res)   mtj00241

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SPRY     SPRY domain                                    106.0    7.3e-28   1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           13.1      0.045   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SPRY       1/1     358   482 ..     1   154 []   106.0  7.3e-28
zf-C3HC4   1/1     527   561 ..     1    50 []    13.1    0.045

Alignments of top-scoring domains:
SPRY: domain 1 of 1, from 358 to 482: score 106.0, E = 7.3e-28
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger
                      +G++Y+EV+v t+g     +++Gwat ++              ++  
   mKIAA1972   358    TGVWYYEVTVVTSGV----MQIGWATRDS----------KFLNHEGY 390  

                   llGddegswgydgsggkkyhagesgepyglpfqekgdviGcflDyeagVt
                   ++Gdde+s++ydg+++  +++ +s ++  + ++e gd++G +lD+ +   
   mKIAA1972   391 GIGDDEYSCAYDGCRQLIWYNARSKPHVHPCWKE-GDTVGFLLDLNEK-Q 438  

                   isFtkNGkyLgd.sEshiyaFrnvtfdkkpggpLyPavslgsadgggeai
                   + F++NG +L  ++     +F+  t +     +++ a s+ s     +++
   mKIAA1972   439 MIFFLNGNQLPPeK----QVFS-STVS-----GFFAAASFMS----YQQC 474  

                   rlnfgqlp<-*
                   ++nfg +p   
   mKIAA1972   475 EFNFGARP    482  

zf-C3HC4: domain 1 of 1, from 527 to 561: score 13.1, E = 0.045
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C +C++e ++       + pCgHs      C +C ++         C
   mKIAA1972   527    CSLCCDEVADTQ-----LKPCGHS----DLCMDCALQLET------C 558  

                   plC<-*
                   plC   
   mKIAA1972   559 PLC    561  

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