hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid04002/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1971  ( 798 res)   mid04002

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WH2      WH2 motif                                       23.3     0.0057   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WH2        1/2     703   721 ..     1    21 []     2.2  1.2e+02
WH2        2/2     733   750 ..     1    21 []    21.4    0.022

Alignments of top-scoring domains:
WH2: domain 1 of 2, from 703 to 721: score 2.2, E = 1.2e+02
                   *->aRsaLLaaIrsagqGikLKKv<-*
                      + ++ La  r   ++++L+Kv   
   mKIAA1971   703    SMDEVLASLR--QGKASLRKV    721  

WH2: domain 2 of 2, from 733 to 750: score 21.4, E = 0.022
                   *->aRsaLLaaIrsagqGikLKKv<-*
                         + LaaIr   qG++LKKv   
   mKIAA1971   733    VNEQVLAAIR---QGVQLKKV    750  

//