hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11376/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1970  ( 337 res)   mpm11376

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
gltX_bact gltX_bact: glutamyl-tRNA synthetase           222.6    5.8e-63   1
gltX_arch gltX_arch: glutamyl-tRNA synthetase          -323.9       0.02   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
gltX_arch   1/1       2   337 .]     1   600 []  -323.9     0.02
gltX_bact   1/1      25   337 .]     1   513 []   222.6  5.8e-63

Alignments of top-scoring domains:
gltX_arch: domain 1 of 1, from 2 to 337: score -323.9, E = 0.02
                   *->VeelilryallNAvKYsAADVACWGkAnpkAVmGsvmsenPElRkkA
                            + ++  A+ ++                              
   mKIAA1970     2    ------PHVV--ALGHR------------------------------ 10   

                   keVlelVeeiveEvndLSseelkellkklgvdkkaKkekKaKgLiELpga
                             v++              +++++               pga
   mKIAA1970    11 ----------VGR-------------REASLGPD-------------PGA 24   

                   KkGeVVmRFAPNPSGPLHIGHARAAiLNqyfAkkYeGKLIlRfdDTDPrt
                       V  RFAP P G LH+G  R A+ N  fAkk  G +IlR++DTD + 
   mKIAA1970    25 P---VRVRFAPSPTGFLHLGGLRTALYNYIFAKKHQGSFILRLEDTDQS- 70   

                   KRvkpEAYDmIlEDLdWLGvKgDEv.........vyqSDRieiYYdYarK
                    R  p A ++I   L+W G+ +DE ++++++ ++  qS R+ +Y   ++ 
   mKIAA1970    71 -RLVPGAAESIEDMLEWAGIPPDESprrggpagpYCQSQRLALYAQATEA 119  

                   LIemGkAYvCdCspEeFRElRnkGvaCacRdrsvEeNLeiWTEeMleGee
                   L   G AY C+C p  +  l+ +    a R+r       ++  +  +   
   mKIAA1970   120 LLRSGAAYPCFCLPQRLELLKKE----ALRSRQT----PRYDNRCRNLSQ 161  

                   EegkvvVRvKtDlkHkNPaIRDwVifRivk............tpHPRT..
                      +v+  + +D   + PaIR    fR ++  +  ++   + t H   + 
   mKIAA1970   162 --AQVAQKLAVD---PKPAIR----FRLEEavpafqdlvygwTQHEVAsv 202  

                   .GdkYkV....YPtmdFsVaidDHLLGvTHvLRGKDhidnerkQqYiYky
                   +Gd    ++++ Pt+     +dDH   + HvLRG + ++++ k   +Y+ 
   mKIAA1970   203 eGDPVILksdgFPTYHLACVVDDHHMSISHVLRGSEWLVSTSKHLLLYQA 252  

                   fGWelPefihyGrlKIndvrtLSTssikkgIvrGdYsGNWDDPRLpTLRA
                   +GW +P f h   l   d  +LS           +  G            
   mKIAA1970   253 LGWQPPRFAHLPLLLNRDGSKLS-----------KRQG------------ 279  

                   vRRRGikPEAIrefmlsiGvkrnDvklSWknlYAlNkkiIDkkArRyFFi
                                ++l+                             +F++
   mKIAA1970   280 ------------DIFLE-----------------------------HFAA 288  

                   wnPVKleieGSElPQekkiverPlHPdnPEvGeRkLiyegeiYVdkDDle
                    +          lP     + +                          l+
   mKIAA1970   289 TG-------F--LP-----EAL--------------------------LD 298  

                   vlNegeevRLmDlvNViiekknDdgskyhslelEgarKkgkkiIHWlPeT
                                   ii+            ++ g     +    Wl   
   mKIAA1970   299 ----------------IITNCG--------SGFAGTYA--AEWSWWLSL- 321  

                   kdavkvkVimpDaeiteGlvEeDaskvDFLTPQTEFHTDAIADLNVKDme
                             +           Da +                        
   mKIAA1970   322 ---------SF-----------DAGRP----------------------- 328  

                   VgDiiQFERFGFvRlDsadkdGlVyvYFthp<-*
                               +R   a+          +    
   mKIAA1970   329 ------------ARQSIAP----------IT    337  

gltX_bact: domain 1 of 1, from 25 to 337: score 222.6, E = 5.8e-63
                   *->kvRtRfAPSPTGyLHiGgaRTAlFNYLfArhtgGkFiLRIEDTDleR
                      +vR+RfAPSPTG+LH+Gg+RTAl+NY+fA+ ++G FiLR+EDTD++R
   mKIAA1970    25    PVRVRFAPSPTGFLHLGGLRTALYNYIFAKKHQGSFILRLEDTDQSR 71   

                   nieEaeesIlegLkWLGiswDESvyvgGnYgPyyQSqRldiYkkyikeLL
                   ++++a+esI + L+W Gi++DES+  gG  gPy QSqRl+ Y ++ + LL
   mKIAA1970    72 LVPGAAESIEDMLEWAGIPPDESPRRGGPAGPYCQSQRLALYAQATEALL 121  

                   eeGlAYrCYCSkEeLErlRkeeiqkanketPrYDgrcRnLheeeienkLa
                    +G AY C+C + +LE l+ +e ++   +tPrYD+rcRnL++ ++ +kLa
   mKIAA1970   122 RSGAAYPCFCLPQRLELLK-KE-ALRSRQTPRYDNRCRNLSQAQVAQKLA 169  

                   kgippVVRFKiPqeaeisFnDqvrGeItfegseLdnDkRYDDlVIlksDe
                    + +p +RF+  +ea+++F+D+v G    e  +  +     D+VIlksD 
   mKIAA1970   170 VDPKPAIRFRL-EEAVPAFQDLVYGWTQHEVASVEG-----DPVILKSD- 212  

                   nPeeaFGsPTYNFAVVvDDyLMkITHViRGEDHiSNTPkQIliYkALGwk
                         G PTY++A+VvDD+ M I+HV+RG +++ +T k++l+Y+ALGw+
   mKIAA1970   213 ------GFPTYHLACVVDDHHMSISHVLRGSEWLVSTSKHLLLYQALGWQ 256  

                   riPtFaHlplIlnedGKKLSKRdGktatsieqfkeqGYLPEALiNylaLL
                    +P+FaHlpl+ln dG KLSKR G  + ++e f + G+LPEA        
   mKIAA1970   257 -PPRFAHLPLLLNRDGSKLSKRQG--DIFLEHFAATGFLPEA-------- 295  

                   GWsppdDLAskdqEiFsleElieiFslnrlsKSPAkFDikKLkWlNahYl
                                                                     
   mKIAA1970     - -------------------------------------------------- -    

                   keRiLpdeeLleLldphlkkkesvvktstlneeqewLkeLllLlkerlkt
                                                       L ++++++++    
   mKIAA1970   296 ------------------------------------LLDIITNCGS---- 305  

                   LkElaelirlfFedkkevdedakkklekfknvkevLealkkkLqaleewt
                                        +++                   + + ew+
   mKIAA1970   306 ---------------------GFAG------------------TYAAEWS 316  

                   DaeevksaikqvaeelglKgkkvfmPLRvaltGkghGpdLaqsleliGsK
                                                          L  s+++    
   mKIAA1970   317 -------------------------------------WWLSLSFDAGRPA 329  

                   tesikRLkeAlqFiaa<-*
                    +si+ ++           
   mKIAA1970   330 RQSIAPIT--------    337  

//