hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11376/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1970  ( 337 res)   mpm11376

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
tRNA-synt_1c tRNA synthetases class I (E and Q), cata   367.7   1.2e-106   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
tRNA-synt_1c   1/1      25   335 ..     1   326 []   367.7 1.2e-106

Alignments of top-scoring domains:
tRNA-synt_1c: domain 1 of 1, from 25 to 335: score 367.7, E = 1.2e-106
                   *->kVrTRFAPSPTGyLHIGhArtALfNylfAknhnGkfilRieDTDpeR
                      +Vr+RFAPSPTG+LH G+ rtAL+Ny fAk+h+G filR+eDTD+ R
   mKIAA1970    25    PVRVRFAPSPTGFLHLGGLRTALYNYIFAKKHQGSFILRLEDTDQSR 71   

                   ekpEyeesIledLkWLGikwDESpdvgggygpyyqSdrfdiyykyaeeLI
                    +p+++esI+++L+W Gi +DESp  gg+ gpy qS+r+  y +  e+L+
   mKIAA1970    72 LVPGAAESIEDMLEWAGIPPDESPRRGGPAGPYCQSQRLALYAQATEALL 121  

                   ekGlAYvCfctpEeLeeeReeqedpalgSperprYdeecLrlfeEemkkg
                   ++G AY+Cfc p +Le +++e    al S  +prYd +c++l++++++ +
   mKIAA1970   122 RSGAAYPCFCLPQRLELLKKE----ALRSRQTPRYDNRCRNLSQAQVAQK 167  

                   eaeggpatvRfKipmespnyemrDlVrG....rikfepsalhdrvglKwd
                   +a + ++ +Rf+++++ p   + DlV+G +++++       +d+v+lK+d
   mKIAA1970   168 LAVDPKPAIRFRLEEAVP--AFQDLVYGwtqhEVASVE---GDPVILKSD 212  

                   gyPTYdFAvviDDalmgITHvlRgeEhldntpkqiwiyeAlgwevippfi
                   g PTY++A+v+DD+ m I+HvlRg E+l +t k++++y+Algw + p+f+
   mKIAA1970   213 GFPTYHLACVVDDHHMSISHVLRGSEWLVSTSKHLLLYQALGWQP-PRFA 261  

                   HlylrlNldgtkLSKRKlslsVfisqvkgwGdlpeAllnfLrrlGwspeg
                   Hl+l+lN dg kLSKR ++++   +++ + G+lpeAll  ++  G     
   mKIAA1970   262 HLPLLLNRDGSKLSKRQGDIF--LEHFAATGFLPEALLDIITNCGSG--- 306  

                   irEfftreeliksfdlnrlsksleaFdrkkLdw<-*
                       f+     +   +  ls  +    r+ + +   
   mKIAA1970   307 ----FAGTYAAEWSWWLSLSFDAGRPARQSIAP    335  

//