hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic07029/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1966  ( 507 res)   mic07029

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
YTH      YT521-B-like family                            204.4    1.8e-57   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
YTH        1/1     179   275 ..     1    98 []   204.4  1.8e-57

Alignments of top-scoring domains:
YTH: domain 1 of 1, from 179 to 275: score 204.4, E = 1.8e-57
                   *->LiFSVNgSGkFcGvAeMvspvdfnksqevWqlqagdskdkwgGkvFk
                      LiFSV++SGkF+G+A+++s++++  s+ +W+l+ag+s++++gG vFk
   mKIAA1966   179    LIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGG-VFK 224  

                   VkWiivkDlPfqklrHllnpnNEnKPVkiSRDtQEveleiGiqllklFks
                   ++Wi++++lPf+k +Hl+np+NE+KPVki+RD+QE+ele+G+ql+ lF++
   mKIAA1966   225 IDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPP 274  

                   y<-*
                   +   
   mKIAA1966   275 D    275  

//