hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbp/mbp00252/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1965 ( 690 res) mbp00252 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- VWD von Willebrand factor (vWF) type D domain 151.4 9.3e-41 1 VWC von Willebrand factor (vWF) type C domain 117.1 1.9e-30 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- VWC 1/5 55 110 .. 1 75 [] 23.3 0.035 VWC 2/5 113 168 .. 1 75 [] 11.9 0.59 VWC 3/5 171 229 .. 1 75 [] 37.6 1.7e-06 VWC 4/5 243 294 .. 1 75 [] 35.5 7.2e-06 VWC 5/5 306 362 .. 1 75 [] 39.8 3.8e-07 VWD 1/1 360 518 .. 1 185 [] 151.4 9.3e-41 Alignments of top-scoring domains: VWC: domain 1 of 5, from 55 to 110: score 23.3, E = 0.035 *->CvhpnGevyrdgetWkpdkpCqiCtCldgekvlCdkveCppppslpc C Gev + + +++ pC +C+Cl+ v+C+ Cp + mKIAA1965 55 CEN-EGEVLQI-PFITDN-PCIMCVCLNK-EVTCKREKCPVLSR--- 94 kdsdCpnperlpavaekppGeCCpeyrC<-* dC+ + k+ G CC+ rC mKIAA1965 95 ---DCALA-------IKQRGACCE--RC 110 VWC: domain 2 of 5, from 113 to 168: score 11.9, E = 0.59 *->CvhpnGevyrdgetWkpdk.pCqiCtCldgekvlCdkveCppppslp C+h G+ y+++ +W++ +pC +C++g +v+ + v C mKIAA1965 113 CTH-EGRTYNSSFKWQTPAePCVLRQCQEG-VVTESEVRCVVH---- 153 ckdsdCpnperlpavaekppGeCCpeyrC<-* C+ p ++ G CCp C mKIAA1965 154 -----CKKP-------AEHQGACCP--TC 168 VWC: domain 3 of 5, from 171 to 229: score 37.6, E = 1.7e-06 *->CvhpnGevyrdgetWkpdk.pCqiCtCldgekvlCdkveCppppslp Cv+ G++yr+ge+++p+ ++C +C C +g ++C Cp mKIAA1965 171 CVF-EGVQYREGEEFQPEGnKCITCSCVGG-RTQCVREVCPIL---- 211 ckdsdCpnperlpavaekppGeCCpeyrC<-* +Cp+ p G+CCp +C mKIAA1965 212 ----SCPQH-----LSHTPSGQCCP--KC 229 VWC: domain 4 of 5, from 243 to 294: score 35.5, E = 7.2e-06 *->CvhpnGevyrdgetWkpdkpCqiCtCldgekvlCdkveCppppslpc C++ +vy +g ++ d C++CtC+d+ + +C+k+ C p mKIAA1965 243 CLF-RSDVYDNGASFVYD-NCTVCTCKDS-TMVCKKK-CSHP----- 280 kdsdCpnperlpavaekppGeCCpeyrC<-* ++C ++ ++ CC+ C mKIAA1965 281 --GVCNSD----------EDACCE--DC 294 VWC: domain 5 of 5, from 306 to 362: score 39.8, E = 3.8e-07 *->CvhpnGevyrdgetWkpdkpCqiCtCldgekvlCdkveCppppslpc C + + ++rdge+W + C iC C g k+ C+k++C p+ mKIAA1965 306 CKF-GSKIFRDGEMWSSV-NCSICACVKG-KTECRKKQCVPVS---- 345 kdsdCpnperlpavaekppGeCCpeyrC<-* +Cp++ + + + CCp +C mKIAA1965 346 ---SCPQG------KILNRKGCCP--IC 362 VWD: domain 1 of 1, from 360 to 518: score 151.4, E = 9.3e-41 *->wsctqeecagratCsvsGdphytTFDGlkYtfpmpGnCyYvLaqdyP + ct+++ +C+v+Gdphy+TFDG++++f +G+C+YvL +d mKIAA1965 360 PICTEKPG----VCTVFGDPHYNTFDGRTFNF--QGTCQYVLTKD-- 398 GsCssepsegsFsVllknvpcggsgktdklatclksvkvelgdieielk. Css s +F Vl+kn+ + +++ +++ksv ++lg++++ l++ mKIAA1965 399 --CSSPAS--PFQVLVKNDARRTRS-----FSWTKSVELMLGESTVSLQq 439 ggkvtvngqrtpkvslPyktsdgsirierrsagggylvvitslglrvqvt +v+ ng+r + lP +t+ i g++l v t+ g +++ mKIAA1965 440 HLTVRWNGSR---IALPCHTPHFHIDLD-----GYLLKVTTRAG--LEIS 479 fDgktllsvqlpssyrgkTcGLCGnfdgepeDDfrtpdG<-* +Dg +++ v + +gk+cGLCGn++g ++DD+ dG mKIAA1965 480 WDGDSFVEVMAAPHLKGKLCGLCGNYNGHKRDDLIGGDG 518 //