hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtk/mtk01075/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1959  ( 461 res)   mtk01075

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PGAM     Phosphoglycerate mutase family                  81.3    1.9e-20   1
SH3_1    SH3 domain                                      30.6    3.5e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SH3_1      1/1      69   129 ..     1    58 []    30.6  3.5e-05
PGAM       1/1     197   395 ..     1   216 []    81.3  1.9e-20

Alignments of top-scoring domains:
SH3_1: domain 1 of 1, from 69 to 129: score 30.6, E = 3.5e-05
                   *->kkvvALYDYearesdELsFkkGDvitvleksdd....gWWkgrlkgt
                      ++ +++Y+Y ++++dEL + +GD+i+ + ++  ++++gW +g +++t
   mKIAA1959    69    ETLQVIYPYSPQNDDELELVPGDFIFMSPMEQTstseGWIYGTSLTT 115  

                   gGkeGliPsNYVepv<-*
                   g   Gl P NY+++    
   mKIAA1959   116 G-CSGLLPENYITKA    129  

PGAM: domain 1 of 1, from 197 to 395: score 81.3, E = 1.9e-20
                   *->rlyLvRHGete............wlNaenlqeegr.i.....s.q..
                       l++ RHGe  +   ++   ++ +  a     +gr i+++ +++++ 
   mKIAA1959   197    CLFVCRHGERMdvvfgkywlsqcF-DA-----KGRyIrtnlnMpHsl 237  

                   ..lqGwt........LtekGreQAralgkrllqLkvqavesrtaslklse
                   ++  G  ++ +++ + t  G  QAr++g++   L                
   mKIAA1959   238 pqRSGGFrdyekdapITVFGCMQARLVGEA---LL--------------- 269  

                   elgipfdaiysSPlkRArqTAeiilaelLkaelgnpedrwdeglktklpv
                   e +  +d++y+SP +R++qTA+  +++    +l+++          +l++
   mKIAA1959   270 ESNTVIDHVYCSPSLRCVQTAHN-ILK----GLQQDN---------HLKI 305  

                   ivdprL...rErdfG.fe.dWsrceeGltfaelkekyp...eyr.wredp
                   +v+p+L +   +  G+ +++W       + + +++    +++yr+ ++  
   mKIAA1959   306 RVEPGLfewTKWVAGsTLpAW-----IPPSELAAANLSvdtTYRpHIPVS 350  

                   adfrppgaakredeiegvPgGEeasladvaaRv.aaleeli....hpgen
                   + +  +                  s++ +++R  ++ +e+i++ +++g n
   mKIAA1959   351 KLAISE------------------SYDTYINRSfQVTKEIIseckSKGNN 382  

                   viliVsHGgviral<-*
                   + liV+H+ ++ a+   
   mKIAA1959   383 I-LIVAHASSLEAC    395  

//