hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj00267/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1955  ( 1073 res)   mtj00267

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RNB      RNB-like protein                               265.1    9.5e-76   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RNB        1/1     486   729 ..     1   248 []   265.1  9.5e-76

Alignments of top-scoring domains:
RNB: domain 1 of 1, from 486 to 729: score 265.1, E = 9.5e-76
                   *->rDlr.dllivTIkDpetarDfWvDDAlsvkkldnntdGtyeLgVHIA
                      +Dlr++ l+++I Dp++++D   DD lsv++l n   G++eLgVHIA
   mKIAA1955   486    KDLRtTHLVFSI-DPKGCEDV--DDTLSVRTLNN---GNLELGVHIA 526  

                   DVthyVkpgSsLDkEAakRgtsvYLPqkYvvPMLPeeLsdglCSLkpned
                   DVth+V+p+S +D EA+ R+t++YL ++ +++MLP +Ls +lCSL  ++d
   mKIAA1955   527 DVTHFVAPNSYIDVEARTRATTYYLADR-RYDMLPSILSADLCSLLGGVD 575  

                   RlalScemtlDesGkeikdvkigpSvIrskarltYeevdeiL........
                   R+a+S+ ++lD+++ eik+v++g+ +Irs ++l Ye ++e+L+++ +  +
   mKIAA1955   576 RYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLdgnfsivd 625  

                   ........etkeesatkdesldseseplvesLrllfelakklrkkRlkrG
                   + ++ +  +++        s++ + e+lv ++  l ++a+ +r+kR   G
   mKIAA1955   626 dipelkalDKQ--------SQQAKLEELVWAIGKLTDIARHIRAKRDRCG 667  

                   laldlFespelkfslDdeegpiepieieieersdaesllieEfMllANea
                    al l e  e++++lD + +   + ++ +++ ++++   ++E+M+lAN  
   mKIAA1955   668 -ALEL-EGVEVRVQLD-DKK--NIRDLIPKQPLEVHET-VAECMILANHW 711  

                   VArhlyeefgipalyRrH<-*
                   VA ++ e f+ +al+R H   
   mKIAA1955   712 VAKKIWESFPHQALLRQH    729  

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