hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpj/mpj01436/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1954 ( 643 res) mpj01436 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 266.5 2.1e-75 13 KRAB krueppel associated box 147.8 1.1e-39 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- KRAB 1/1 21 81 .. 1 62 [] 147.8 1.1e-39 ZnF_C2H2 1/13 215 237 .. 1 23 [] 26.8 0.003 ZnF_C2H2 2/13 257 279 .. 1 23 [] 25.8 0.0062 ZnF_C2H2 3/13 285 307 .. 1 23 [] 22.0 0.084 ZnF_C2H2 4/13 313 335 .. 1 23 [] 30.4 0.00025 ZnF_C2H2 5/13 341 363 .. 1 23 [] 26.1 0.0048 ZnF_C2H2 6/13 369 391 .. 1 23 [] 25.6 0.007 ZnF_C2H2 7/13 397 419 .. 1 23 [] 29.9 0.00035 ZnF_C2H2 8/13 453 475 .. 1 23 [] 23.0 0.042 ZnF_C2H2 9/13 501 523 .. 1 23 [] 28.7 0.00081 ZnF_C2H2 10/13 529 551 .. 1 23 [] 28.1 0.0012 ZnF_C2H2 11/13 557 579 .. 1 23 [] 26.9 0.0028 ZnF_C2H2 12/13 585 607 .. 1 23 [] 26.9 0.0029 ZnF_C2H2 13/13 613 635 .. 1 23 [] 25.9 0.0055 Alignments of top-scoring domains: KRAB: domain 1 of 1, from 21 to 81: score 147.8, E = 1.1e-39 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk VtF+DVAV F+qEEW++ paQr LYRdVMlENY +LvSLG +qvsk mKIAA1954 21 VTFKDVAVNFTQEEWHHVGPAQRSLYRDVMLENYNHLVSLG-YQVSK 66 pdliskLEqgeEpwi<-* p++i+kLEqgeEpwi mKIAA1954 67 PEVIFKLEQGEEPWI 81 ZnF_C2H2: domain 1 of 13, from 215 to 237: score 26.8, E = 0.003 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C ksf ++++L++H ++H mKIAA1954 215 YKCDK-CRKSFIHRsSLNKHEKIH 237 ZnF_C2H2: domain 2 of 13, from 257 to 279: score 25.8, E = 0.0062 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C Cgk+f ++++L++H+r+H mKIAA1954 257 HECAD-CGKTFLWRtQLTEHQRIH 279 ZnF_C2H2: domain 3 of 13, from 285 to 307: score 22.0, E = 0.084 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk f++ ++L +H H mKIAA1954 285 FECNV-CGKAFRHSsSLGQHENAH 307 ZnF_C2H2: domain 4 of 13, from 313 to 335: score 30.4, E = 0.00025 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f + ++L++H+r+H mKIAA1954 313 YQCSL-CGKAFQRSsSLVQHQRIH 335 ZnF_C2H2: domain 5 of 13, from 341 to 363: score 26.1, E = 0.0048 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg+sf++ ++L++H +H mKIAA1954 341 YRCNL-CGRSFRHStSLTQHEVTH 363 ZnF_C2H2: domain 6 of 13, from 369 to 391: score 25.6, E = 0.007 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk fs+ ++L++H r+H mKIAA1954 369 FQCKE-CGKAFSRCsSLVQHERTH 391 ZnF_C2H2: domain 7 of 13, from 397 to 419: score 29.9, E = 0.00035 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C+i Cg+ f + ++L +Hmr+H mKIAA1954 397 FECSI-CGRAFGQSpSLYKHMRIH 419 ZnF_C2H2: domain 8 of 13, from 453 to 475: score 23.0, E = 0.042 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgk f + +++ +H+r H mKIAA1954 453 YHCND-CGKDFGHItDFSEHQRLH 475 ZnF_C2H2: domain 9 of 13, from 501 to 523: score 28.7, E = 0.00081 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++ +++++H r+H mKIAA1954 501 YQCNV-CGKAFKRStSFIEHHRIH 523 [output cut off at A = 10 top alignments] //