hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01436/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1954  ( 643 res)   mpj01436

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         333.2    2.9e-96  13
KRAB     KRAB box                                       102.7    7.2e-27   1
GATA     GATA zinc finger                                 9.7       0.15   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1      21    61 ..     1    41 []   102.7  7.2e-27
zf-C2H2    1/13    215   237 ..     1    24 []    30.9  2.9e-05
zf-C2H2    2/13    257   279 ..     1    24 []    29.5  7.6e-05
GATA       1/2     259   300 ..     1    36 []     8.6     0.21
zf-C2H2    3/13    285   307 ..     1    24 []    29.9    6e-05
zf-C2H2    4/13    313   335 ..     1    24 []    34.9  1.9e-06
zf-C2H2    5/13    341   363 ..     1    24 []    29.8  6.1e-05
zf-C2H2    6/13    369   391 ..     1    24 []    35.0  1.7e-06
zf-C2H2    7/13    397   419 ..     1    24 []    32.7  8.5e-06
zf-C2H2    8/13    453   475 ..     1    24 []    23.3   0.0059
zf-C2H2    9/13    501   523 ..     1    24 []    32.1  1.3e-05
zf-C2H2   10/13    529   551 ..     1    24 []    36.4  6.5e-07
zf-C2H2   11/13    557   579 ..     1    24 []    32.3  1.1e-05
GATA       2/2     559   600 ..     1    36 []     5.6     0.52
zf-C2H2   12/13    585   607 ..     1    24 []    34.3  2.7e-06
zf-C2H2   13/13    613   635 ..     1    24 []    34.1  3.3e-06

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 21 to 61: score 102.7, E = 7.2e-27
                   *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-*
                      VtF+DVAV+FtqEEW++ +paQr+LYrdVMlENy +LvSlg   
   mKIAA1954    21    VTFKDVAVNFTQEEWHHVGPAQRSLYRDVMLENYNHLVSLG    61   

zf-C2H2: domain 1 of 13, from 215 to 237: score 30.9, E = 2.9e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C ksF ++s+L++H ++H   
   mKIAA1954   215    YKCD-KCRKSFIHRSSLNKHEKIH    237  

zf-C2H2: domain 2 of 13, from 257 to 279: score 29.5, E = 7.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  dCgk+F  + +L+ H+r+H   
   mKIAA1954   257    HECA-DCGKTFLWRTQLTEHQRIH    279  

GATA: domain 1 of 2, from 259 to 300: score 8.6, E = 0.21
                   *->CsnCgttkTplWRrgp.........dGnrtLCNACGLyykkhgvk<-
                      C+ Cg  kT lWR   +++++ ++++++  +CN CG  +++   +  
   mKIAA1954   259    CADCG--KTFLWRTQLtehqrihtgEKPF-ECNVCGKAFRHSSSL   300  

                   *
                    
   mKIAA1954     -   -    

zf-C2H2: domain 3 of 13, from 285 to 307: score 29.9, E = 6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk+F+++s+L +H + H   
   mKIAA1954   285    FECN-VCGKAFRHSSSLGQHENAH    307  

zf-C2H2: domain 4 of 13, from 313 to 335: score 34.9, E = 1.9e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  Cgk+F r+s+L +H+r+H   
   mKIAA1954   313    YQCS-LCGKAFQRSSSLVQHQRIH    335  

zf-C2H2: domain 5 of 13, from 341 to 363: score 29.8, E = 6.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+  Cg+sF+++ +L++H  tH   
   mKIAA1954   341    YRCN-LCGRSFRHSTSLTQHEVTH    363  

zf-C2H2: domain 6 of 13, from 369 to 391: score 35.0, E = 1.7e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk+Fsr s+L +H rtH   
   mKIAA1954   369    FQCK-ECGKAFSRCSSLVQHERTH    391  

zf-C2H2: domain 7 of 13, from 397 to 419: score 32.7, E = 8.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cg++F ++ +L +H+r+H   
   mKIAA1954   397    FECS-ICGRAFGQSPSLYKHMRIH    419  

zf-C2H2: domain 8 of 13, from 453 to 475: score 23.3, E = 0.0059
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ dCgk F +  ++  H+r H   
   mKIAA1954   453    YHCN-DCGKDFGHITDFSEHQRLH    475  

zf-C2H2: domain 9 of 13, from 501 to 523: score 32.1, E = 1.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F+r+ ++  H r+H   
   mKIAA1954   501    YQCN-VCGKAFKRSTSFIEHHRIH    523  

zf-C2H2: domain 10 of 13, from 529 to 551: score 36.4, E = 6.5e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cg++Fsr s+L++H rtH   
   mKIAA1954   529    YECN-ECGEAFSRLSSLTQHERTH    551  

zf-C2H2: domain 11 of 13, from 557 to 579: score 32.3, E = 1.1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  dCgk+Fs++s+L +H rtH   
   mKIAA1954   557    YECI-DCGKAFSQSSSLIQHERTH    579  

GATA: domain 2 of 2, from 559 to 600: score 5.6, E = 0.52
                   *->CsnCgttk...TplWRrgp....dGnrtLCNACGLyykkhgvk<-*
                      C  Cg   +++++l  +  ++++++++ +CN CG  ++k+  +   
   mKIAA1954   559    CIDCGKAFsqsSSLIQHERthtgEKPY-ECNECGRAFRKKTNL    600  

zf-C2H2: domain 12 of 13, from 585 to 607: score 34.3, E = 2.7e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cg++F+ k nL+ H+rtH   
   mKIAA1954   585    YECN-ECGRAFRKKTNLHDHQRTH    607  

zf-C2H2: domain 13 of 13, from 613 to 635: score 34.1, E = 3.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +Cg+ Fsr+s L++H r+H   
   mKIAA1954   613    YACK-ECGRNFSRSSALTKHHRVH    635  

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