hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mek/mek00815/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1953  ( 248 res)   mek00815

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ITI_HC_C Inter-alpha-trypsin inhibitor heavy chain C-    56.4    6.3e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ITI_HC_C   1/1      11   205 ..     1   191 []    56.4  6.3e-13

Alignments of top-scoring domains:
ITI_HC_C: domain 1 of 1, from 11 to 205: score 56.4, E = 6.3e-13
                   *->eqGieVnGqligeKrarkkkkegKlstyFgklgvtf.kkpdlqvevt
                      ++G++VnG lig+ +a +++++ K +tyF ++ + +++++   +e+t
   mKIAA1953    11    NSGVTVNGELIGA-PAPPNGHK-KQRTYFRTITILInRPERSYLEIT 55   

                   pEtItltrgrrssvysWkdtlfvvlpGlkmtidkeklLvvslpdevtfsv
                   p ++ l  g    v+    +++v   Gl +++    +++v  +  + f++
   mKIAA1953    56 PSRVILDGGD-RLVLPCNQSVVVGSRGLEVSVSANANITVVIQGNIAFVI 104  

                   LlhrVWKk.hpvpqdfLglylpDtdrFSarvhGlLGQFy..........q
                   L h   K + p  +d Lg+y+  +  +S + hGlLGQF +++ +  + + 
   mKIAA1953   105 LIHL-YKNpAPFQRDHLGFYIANSRGLSDNCHGLLGQFLnqdaklvgapE 153  

                   evdfevfdirP.GsDPtKPdatmeVkghdltVTRglqkDYrqDgvpG.te
                   e +  +++ +P  +  + P+a + Vkg++ +V    +k Y      G++ 
   mKIAA1953   154 EYGKNLSN-QPfPRAEGMPEAILKVKGRRVPVVWKQRKIY-----NGqAQ 197  

                   vsCWfVhn<-*
                   v CWf  n   
   mKIAA1953   198 VDCWFDRN    205  

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