hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid22012/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1951  ( 392 res)   mid22012

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     76.1    4.2e-18   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/7      64    86 ..     1    23 []    16.8      3.1
ZnF_C2H2   2/7     116   138 ..     1    23 []    12.0       14
ZnF_C2H2   3/7     239   262 ..     1    23 []    10.8       19
ZnF_C2H2   4/7     271   293 ..     1    23 []    18.8     0.75
ZnF_C2H2   5/7     298   320 ..     1    23 []    24.5    0.015
ZnF_C2H2   6/7     326   348 ..     1    23 []    18.3      1.1
ZnF_C2H2   7/7     354   375 ..     1    23 []     6.9       52

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 7, from 64 to 86: score 16.8, E = 3.1
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cg  +++ ++   H+ +H   
   mKIAA1951    64    FMCSE-CGSLYNTLeEVLSHQEQH    86   

ZnF_C2H2: domain 2 of 7, from 116 to 138: score 12.0, E = 14
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + C++   s+++L  H+  H   
   mKIAA1951   116    FQCGE-CSQLILSPsELLAHQDAH    138  

ZnF_C2H2: domain 3 of 7, from 239 to 262: score 10.8, E = 19
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                        C   C+++++s +a  +H r +H   
   mKIAA1951   239    QSCGD-CPQHCTSSgARHKHRRaSH    262  

ZnF_C2H2: domain 4 of 7, from 271 to 293: score 18.8, E = 0.75
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ C++sfss++ L+ H r H   
   mKIAA1951   271    FHCSQ-CQRSFSSAnRLVAHGRAH    293  

ZnF_C2H2: domain 5 of 7, from 298 to 320: score 24.5, E = 0.015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+  C+k+f+ + +L++H+r H   
   mKIAA1951   298    HECTT-CSKVFKKAaSLEQHQRLH    320  

ZnF_C2H2: domain 6 of 7, from 326 to 348: score 18.3, E = 1.1
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C   Cg+ f ++  L+ H r H   
   mKIAA1951   326    YLCVD-CGRGFGTElTLVAHRRAH    348  

ZnF_C2H2: domain 7 of 7, from 354 to 375: score 6.9, E = 52
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C   Cgk+fs+ + +  H r+H   
   mKIAA1951   354    HRCR--CGKTFSNMtKFLYHRRTH    375  

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