hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid22012/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1951  ( 392 res)   mid22012

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          95.1    1.4e-24   7
GATA     GATA zinc finger                                 8.3       0.23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/7      64    86 ..     1    24 []    16.6     0.58
zf-C2H2    2/7     116   138 ..     1    24 []    15.4      1.4
zf-C2H2    3/7     239   262 ..     1    24 []    10.6      9.2
zf-C2H2    4/7     271   293 ..     1    24 []    22.2    0.013
GATA       1/1     273   313 ..     1    36 []     8.3     0.23
zf-C2H2    5/7     298   320 ..     1    24 []    27.4  0.00032
zf-C2H2    6/7     326   348 ..     1    24 []    19.2    0.096
zf-C2H2    7/7     354   375 ..     1    24 []    14.8        2

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 7, from 64 to 86: score 16.6, E = 0.58
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cg  +++ ++  +H+  H   
   mKIAA1951    64    FMCS-ECGSLYNTLEEVLSHQEQH    86   

zf-C2H2: domain 2 of 7, from 116 to 138: score 15.4, E = 1.4
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +C +   ++s+L +H+  H   
   mKIAA1951   116    FQCG-ECSQLILSPSELLAHQDAH    138  

zf-C2H2: domain 3 of 7, from 239 to 262: score 10.6, E = 9.2
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +C  dC + +++++  ++H+r +H   
   mKIAA1951   239    QSCG-DCPQHCTSSGARHKHRRAsH    262  

zf-C2H2: domain 4 of 7, from 271 to 293: score 22.2, E = 0.013
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +C++sFs+   L +H r H   
   mKIAA1951   271    FHCS-QCQRSFSSANRLVAHGRAH    293  

GATA: domain 1 of 1, from 273 to 313: score 8.3, E = 0.23
                   *->CsnCgttkTplWRrgp.....dGnrtLCNACGLyykkhgvk<-*
                      Cs+C+ + ++  R   +++ + G +++C  C   +kk   +   
   mKIAA1951   273    CSQCQRSFSSANRLVAhgrahVGGTHECTTCSKVFKKAASL    313  

zf-C2H2: domain 5 of 7, from 298 to 320: score 27.4, E = 0.00032
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  C k+F+  ++L++H+r H   
   mKIAA1951   298    HECT-TCSKVFKKAASLEQHQRLH    320  

zf-C2H2: domain 6 of 7, from 326 to 348: score 19.2, E = 0.096
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C  dCg+ F +  +L +H+r H   
   mKIAA1951   326    YLCV-DCGRGFGTELTLVAHRRAH    348  

zf-C2H2: domain 7 of 7, from 354 to 375: score 14.8, E = 2
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C   Cgk+Fs+   +  H+rtH   
   mKIAA1951   354    HRCR--CGKTFSNMTKFLYHRRTH    375  

//