hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph00578/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1948  ( 463 res)   mph00578

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    227.0    1.6e-63  13

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/13    101   123 ..     1    23 []    23.7    0.025
ZnF_C2H2   2/13    129   151 ..     1    23 []    26.5   0.0037
ZnF_C2H2   3/13    157   179 ..     1    23 []    23.1     0.04
ZnF_C2H2   4/13    185   207 ..     1    23 []    28.4  0.00097
ZnF_C2H2   5/13    213   233 ..     1    23 []    14.3      7.7
ZnF_C2H2   6/13    241   263 ..     1    23 []    17.7      1.6
ZnF_C2H2   7/13    269   291 ..     1    23 []    27.0   0.0026
ZnF_C2H2   8/13    297   319 ..     1    23 []    25.3   0.0082
ZnF_C2H2   9/13    325   347 ..     1    23 []    25.1   0.0097
ZnF_C2H2  10/13    353   375 ..     1    23 []    23.1    0.039
ZnF_C2H2  11/13    381   403 ..     1    23 []    24.8    0.012
ZnF_C2H2  12/13    409   431 ..     1    23 []    24.7    0.013
ZnF_C2H2  13/13    437   459 ..     1    23 []    22.9    0.044

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 13, from 101 to 123: score 23.7, E = 0.025
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+ +++L+ H r+H   
   mKIAA1948   101    YECNE-CGKAFRVRqQLTFHHRIH    123  

ZnF_C2H2: domain 2 of 13, from 129 to 151: score 26.5, E = 0.0037
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ f++  +L+rH+r H   
   mKIAA1948   129    YECKE-CGMAFRQTaHLTRHQRLH    151  

ZnF_C2H2: domain 3 of 13, from 157 to 179: score 23.1, E = 0.04
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ f   ++L+ H++ H   
   mKIAA1948   157    YECKE-CGQAFIYGpELRAHQKLH    179  

ZnF_C2H2: domain 4 of 13, from 185 to 207: score 28.4, E = 0.00097
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cgk f+ +++L+ H+r+H   
   mKIAA1948   185    YTCRE-CGKAFRVRgQLTLHQRIH    207  

ZnF_C2H2: domain 5 of 13, from 213 to 233: score 14.3, E = 7.7
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++  +L+rH++     
   mKIAA1948   213    YVCQE-CGKAFRQLaHLTRHQK--    233  

ZnF_C2H2: domain 6 of 13, from 241 to 263: score 17.7, E = 1.6
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f   + L+ H + H   
   mKIAA1948   241    YECKE-CGKDFLCGsGLRVHHKLH    263  

ZnF_C2H2: domain 7 of 13, from 269 to 291: score 27.0, E = 0.0026
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgk f+ +++L+ H+r+H   
   mKIAA1948   269    YECKD-CGKAFRVRqQLTLHQRSH    291  

ZnF_C2H2: domain 8 of 13, from 297 to 319: score 25.3, E = 0.0082
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+fs+  +L+ H r+H   
   mKIAA1948   297    YECTE-CGKTFSRGyHLILHHRIH    319  

ZnF_C2H2: domain 9 of 13, from 325 to 347: score 25.1, E = 0.0097
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C k fs++++L+ H+ +H   
   mKIAA1948   325    YECKE-CWKAFSRYsQLISHQSIH    347  

ZnF_C2H2: domain 10 of 13, from 353 to 375: score 23.1, E = 0.039
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C+  Cgk f+  ++L++H+ vH   
   mKIAA1948   353    YDCKD-CGKAFRLLsQLTQHQSVH    375  

	[output cut off at A = 10 top alignments]
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