hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00578/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1948  ( 463 res)   mph00578

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         298.0    1.2e-85  13

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/13    101   123 ..     1    24 []    28.8  0.00012
zf-C2H2    2/13    129   151 ..     1    24 []    33.8  3.9e-06
zf-C2H2    3/13    157   179 ..     1    24 []    26.2  0.00077
zf-C2H2    4/13    185   207 ..     1    24 []    32.7  8.3e-06
zf-C2H2    5/13    213   235 ..     1    24 []    21.9    0.015
zf-C2H2    6/13    241   263 ..     1    24 []    16.0     0.88
zf-C2H2    7/13    269   291 ..     1    24 []    34.8    2e-06
zf-C2H2    8/13    297   319 ..     1    24 []    31.5  1.9e-05
zf-C2H2    9/13    325   347 ..     1    24 []    31.7  1.7e-05
zf-C2H2   10/13    353   375 ..     1    24 []    31.7  1.7e-05
zf-C2H2   11/13    381   403 ..     1    24 []    28.3  0.00018
zf-C2H2   12/13    409   431 ..     1    24 []    31.5    2e-05
zf-C2H2   13/13    437   459 ..     1    24 []    29.6  7.4e-05

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 13, from 101 to 123: score 28.8, E = 0.00012
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F+ + +L+ H r+H   
   mKIAA1948   101    YECN-ECGKAFRVRQQLTFHHRIH    123  

zf-C2H2: domain 2 of 13, from 129 to 151: score 33.8, E = 3.9e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cg +F++ ++L+rH+r H   
   mKIAA1948   129    YECK-ECGMAFRQTAHLTRHQRLH    151  

zf-C2H2: domain 3 of 13, from 157 to 179: score 26.2, E = 0.00077
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cg++F    +L++H++ H   
   mKIAA1948   157    YECK-ECGQAFIYGPELRAHQKLH    179  

zf-C2H2: domain 4 of 13, from 185 to 207: score 32.7, E = 8.3e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +Cgk+F+ +++L+ H+r+H   
   mKIAA1948   185    YTCR-ECGKAFRVRGQLTLHQRIH    207  

zf-C2H2: domain 5 of 13, from 213 to 235: score 21.9, E = 0.015
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F++ ++L+rH++     
   mKIAA1948   213    YVCQ-ECGKAFRQLAHLTRHQKLN    235  

zf-C2H2: domain 6 of 13, from 241 to 263: score 16.0, E = 0.88
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk F   s L+ H + H   
   mKIAA1948   241    YECK-ECGKDFLCGSGLRVHHKLH    263  

zf-C2H2: domain 7 of 13, from 269 to 291: score 34.8, E = 2e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ dCgk+F+ + +L+ H+r+H   
   mKIAA1948   269    YECK-DCGKAFRVRQQLTLHQRSH    291  

zf-C2H2: domain 8 of 13, from 297 to 319: score 31.5, E = 1.9e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+Fsr ++L  H r+H   
   mKIAA1948   297    YECT-ECGKTFSRGYHLILHHRIH    319  

zf-C2H2: domain 9 of 13, from 325 to 347: score 31.7, E = 1.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C k+Fsr s+L +H+ +H   
   mKIAA1948   325    YECK-ECWKAFSRYSQLISHQSIH    347  

zf-C2H2: domain 10 of 13, from 353 to 375: score 31.7, E = 1.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ dCgk+F+  s+L++H+ +H   
   mKIAA1948   353    YDCK-DCGKAFRLLSQLTQHQSVH    375  

zf-C2H2: domain 11 of 13, from 381 to 403: score 28.3, E = 0.00018
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +CgksF+ +  L  H+ +H   
   mKIAA1948   381    YSCK-ECGKSFRLRQKLALHQSIH    403  

zf-C2H2: domain 12 of 13, from 409 to 431: score 31.5, E = 2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C k+F+ +s+L +Hlr+H   
   mKIAA1948   409    FECK-ECRKAFRLNSSLIQHLRIH    431  

zf-C2H2: domain 13 of 13, from 437 to 459: score 29.6, E = 7.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C+k+F+++s+L++Hl++H   
   mKIAA1948   437    YECK-ECKKAFRQHSHLTHHLKVH    459  

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