hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp02255/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1945  ( 460 res)   mbp02255

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
Orn_Arg_deC_N   Pyridoxal-dependent decarboxylase, py   311.0    1.4e-89   1
Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-    67.9    2.1e-16   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Orn_Arg_deC_N     1/1      46   284 ..     1   287 []   311.0  1.4e-89
Orn_DAP_Arg_deC   1/1     287   410 ..     1   166 []    67.9  2.1e-16

Alignments of top-scoring domains:
Orn_Arg_deC_N: domain 1 of 1, from 46 to 284: score 311.0, E = 1.4e-89
                   *->DlgriverahalwqaflprglkGvvqpfYAVKansdpavlrlLaelG
                      Dlg  v+r+h  + + lpr     v+pfYAV +ns+++vl++LaelG
   mKIAA1945    46    DLG-AVVRKHFCFLKHLPR-----VRPFYAVGCNSSLGVLKVLAELG 86   

                   PlHYGfDcaSkgELerVLaaynagvsPerIifanpcKsrselryAlehrk
                    l  Gf ca k+E e+V+    +gv++++Ii anpcK++++++yA+ h  
   mKIAA1945    87 -L--GFSCANKAEMELVQH---IGVPASKIICANPCKQVAQIKYAAKH-- 128  

                   MGgvvcvtvDnveELekiaklapeaGvkprllLRvkpdvdahahcylstG
                     gv++  +Dn+ EL+k+ k +p a    +++L +++  d+h+   ls  
   mKIAA1945   129 --GVRLLSFDNEVELAKVVKSHPSA----KMVLCIATQ-DSHSLNHLSL- 170  

                   qedsKFGadledieeaealLkaAkelgnlnvvGvhfHVGSgitdleafvk
                        FGa+l++   ++ lL+ Ak+++ ++vvGv+fH+GSg++d++a+++
   mKIAA1945   171 ----RFGASLKS---CRHLLENAKKSH-VEVVGVSFHIGSGCPDPQAYAQ 212  

                   AvedarevfdqgadelGfktidlkiLDlGGGfgvdYtgtrsqSDmSVaed
                    ++dar vf++g+ elG+    + iLDlGGGf++ + +         ++ 
   mKIAA1945   213 SIADARLVFQMGE-ELGHT---MNILDLGGGFPGLEGA---------KVR 249  

                   feeiAevinaaleelfphageygdpgptiiaEPGRyivAa<-*
                   fee+A+vin al+ +fp+     ++g++i+aE GRy+v +   
   mKIAA1945   250 FEEMASVINSALDLYFPE-----GCGVDILAELGRYYVTS    284  

Orn_DAP_Arg_deC: domain 1 of 1, from 287 to 410: score 67.9, E = 2.1e-16
                   *->vLltnViavkevpeddapstsdsl.edged.trmyvvvDGgmgdfir
                      + ++ + a++ev +    ++s++++   ++++  y++  G++g+f+ 
   mKIAA1945   287    TVAVSIVAKREVLD----QASREEqTGAAPkSIVYYLDEGVYGVFNS 329  

                   palyhayhhirllnkgdvvytvtradkenFSlfslPdAwiqLfpvmpree
                    ++++  + ++l +k                                  +
   mKIAA1945   330 VLFDNTCPTPALQKK----------------------------------P 345  

                   ldeeptekvsivGPtCesdgDviakddGivdrpLPelevGDlLafedmGA
                   +++ p++++s++GP  e+  D++a+       +LP l+vGD+L+f +mGA
   mKIAA1945   346 SADQPLYSSSLWGPAVEG-CDCVAE-----GLWLPQLQVGDWLVFDNMGA 389  

                   YgasmaSnYNgfprpaeVlvd<-*
                   Y++   S   g +  ++ + +   
   mKIAA1945   390 YTVDTKSLLGGTQARRVTYAM    410  

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