hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mej/mej02524/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1942  ( 431 res)   mej02524

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   128.8    5.7e-34   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4     188   228 ..     1    46 []    23.6    0.028
WD40       2/4     234   275 ..     1    46 []    35.1  9.4e-06
WD40       3/4     282   321 ..     1    46 []    36.4  3.9e-06
WD40       4/4     327   367 ..     1    46 []    39.5  4.5e-07

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 188 to 228: score 23.6, E = 0.028
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        k+++++ gH g  +  ++++sp       p +l++g+  ++++lW
   mKIAA1942   188    RiKPIFSFAGHMG--EGFALDWSPRV-----PGRLLTGDcQKNVHLW 227  

                   d<-*
                       
   mKIAA1942   228 T    228  

WD40: domain 2 of 4, from 234 to 275: score 35.1, E = 9.4e-06
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      ++++ +    gHt   +V ++++sp+      ++++as+s D +ir+
   mKIAA1942   234    SwNVDQRPFvGHTR--SVEDLQWSPTE-----DTVFASCSaDASIRI 273  

                   Wd<-*
                   Wd   
   mKIAA1942   274 WD    275  

WD40: domain 3 of 4, from 282 to 321: score 36.4, E = 3.9e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +   l t ++H+g  +V+ +++s          +l+sg++Dg +++W
   mKIAA1942   282    KaCMLTTATAHDG--DVNVISWSRRE------PFLLSGGdDGALKVW 320  

                   d<-*
                   d   
   mKIAA1942   321 D    321  

WD40: domain 4 of 4, from 327 to 367: score 39.5, E = 4.5e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++++t+k H +  pVtsv ++p +     + ++a+++ D++i  W
   mKIAA1942   327    SgSPVATFKQHMA--PVTSVEWHPQD-----SGVFAASGaDNQITQW 366  

                   d<-*
                   d   
   mKIAA1942   367 D    367  

//