hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mej/mej02524/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1942  ( 431 res)   mej02524

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       128.9    9.4e-35   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4     190   228 ..     1    38 []    20.4    0.043
WD40       2/4     237   275 ..     1    38 []    42.6    9e-09
WD40       3/4     284   321 ..     1    38 []    36.0  8.4e-07
WD40       4/4     329   367 ..     1    38 []    34.3  2.9e-06

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 190 to 228: score 20.4, E = 0.043
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++ ++ gH +   ++++sp  + +l++g + +++++W    
   mKIAA1942   190    KPIFSFaGHMGEGFALDWSPRVPGRLLTGDCQKNVHLWT    228  

WD40: domain 2 of 4, from 237 to 275: score 42.6, E = 9e-09
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++ + gHt +V+++ +sp + +++as+S+D +i+iWd   
   mKIAA1942   237    VDQRPFvGHTRSVEDLQWSPTEDTVFASCSADASIRIWD    275  

WD40: domain 3 of 4, from 284 to 321: score 36.0, E = 8.4e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + l++ ++H + V+ +++s    p+l+sg++Dg +k+Wd   
   mKIAA1942   284    CMLTTAtAHDGDVNVISWSRR-EPFLLSGGDDGALKVWD    321  

WD40: domain 4 of 4, from 329 to 367: score 34.3, E = 2.9e-06
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++a+++ H +pVt+v ++p ++ ++a +++D+ i  Wd   
   mKIAA1942   329    SPVATFkQHMAPVTSVEWHPQDSGVFAASGADNQITQWD    367  

//