hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg18268/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1940  ( 865 res)   mbg18268

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
F-box    F-box domain                                    23.1     0.0066   1
Tsg101   Tumour susceptibility gene 101 protein (TSG1  -173.1      0.081   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Tsg101     1/1      41   339 ..     1   441 []  -173.1    0.081
F-box      1/1     540   584 ..     1    44 []    23.1   0.0066

Alignments of top-scoring domains:
Tsg101: domain 1 of 1, from 41 to 339: score -173.1, E = 0.081
                   *->ykdgrltkkDllallssFhsLrPrTrvFthnDGssqlLLsiyGTIPv
                        dg+++     a+ s F+ L P  +      G +++ +      ++
   mKIAA1940    41    --DGAAAAAAAAAAASGFP-LAPEPAALLAVPGARREVFE-----ST 79   

                   pykG...vtPYnIPViiWLldtYPvkPPfiyVnLEtFDvpTitMsIKvsq
                    ++G++++t    P    Ll  +  ++P                s++   
   mKIAA1940    80 SFQGkeqAT-GPSPAGPHLLHHHHHHAPLAHFP-----ADLVPASLPC-- 121  

                   eyVdsnGkVaLPYLhnWqpps.snLidLvQeLmslFsepsrDrvPSLPPP
                   e     G+V         p++++ L  +   L  lF+++      S    
   mKIAA1940   122 EELAEPGLV---------PAArYALREIEIPLGELFARK------SVA-- 154  

                   vYSrrrpQpaaPsPTnayatqpsapsSasStlpPyPsaqlagerpfP.Py
                                            sSa St+p             P+P 
   mKIAA1940   155 -------------------------SSACSTPP-------------PgP- 165  

                   PtGsnvpPyPPkstPYPsAGAmGYnPYmnvPqstPYPkgPhgksPyPaas
                         +P P +                          gP+ +sP     
   mKIAA1940   166 ------GPGPCS--------------------------GPSSASPA---- 179  

                   sfppPPPPqPPssavdlsdvdnssqstinaeeikanlisavnElvRedvv
                                        + s  + + ee +a l  +  E++  d +
   mKIAA1940   180 ---------------------SPSPADVAYEEGLARLKIRALEKLEVDRR 208  

                   evadkieAE..lerqt.vlQeslaRteeel...aeGkkkLkaveEtLEqq
                   + +   e+E+++++q + lQ+ l R   el++ +  +++L +++E+LE  
   mKIAA1940   209 LERLSEEVEqkIAGQVgRLQAELERKAAELetaRQESARLGREKEELEER 258  

                   mhslqanidi....LtakraElqkalsdlesfaddldvDeavvatdplsr
                    + l+ ++d++ + L + ++ l  +   l      +    +vv +d  ++
   mKIAA1940   259 ASELSRQVDVsvelLASLKQDLVHKEQEL------SRKQQEVVQIDQFLK 302  

                   QllnnyAkDlAieDvIysLgkslrdgvipldtYLrhVRlLSReQFihRAt
                      +  A +++              + + l ++     lL R     RA 
   mKIAA1940   303 ---ETAAREAS--------------AKLRLQQFIEE--LLERAD---RAE 330  

                   mqKcrqtag<-*
                    q+    ++   
   mKIAA1940   331 RQLQVISSS    339  

F-box: domain 1 of 1, from 540 to 584: score 23.1, E = 0.0066
                   *->lldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kll<
                      +l +   +l +I+ +Ld++ ll ++ V++ wr +++++ +w + ll 
   mKIAA1940   540    ILKMR-AALFCIFTYLDTRTLLHAAEVCRDWRFVARHPaVWTrVLL  584  

                   -*
                     
   mKIAA1940     -    -    

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