hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB Sequence file: /cdna4/rodent/full/goal/mng/mng04094/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1939 ( 798 res) mng04094 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ATPase-Plipid ATPase-Plipid: phospholipid-translocati 529.8 1.9e-155 1 ATPase_P-type ATPase_P-type: ATPase, P-type (transpor 251.1 1.5e-71 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ATPase_P-type 1/5 83 185 .. 1 97 [. 69.1 4.5e-17 ATPase_P-type 2/5 323 425 .. 156 245 .. 77.7 2.5e-19 ATPase_P-type 3/5 495 510 .. 238 253 .. 2.6 13 ATPase_P-type 4/5 536 608 .. 254 315 .. 36.3 1.8e-08 ATPase_P-type 5/5 648 697 .. 317 366 .. 65.1 5e-16 ATPase-Plipid 1/1 33 795 .. 1 1249 [] 529.8 1.9e-155 Alignments of top-scoring domains: ATPase_P-type: domain 1 of 5, from 83 to 185: score 69.1, E = 4.5e-17 *->viliivllfvlletlqkeaaedalrslkdkelnpqkvtvlrn.ggve ++ i++l+ v+ t+ k+a++d++r+ +d+++n++ +vl n+ + mKIAA1939 83 FTTIVPLVLVISMTAVKDATDDYFRHKSDNQVNNRQSKVLINsKLQN 129 isskdlvvGDiVlvkkGdivPADgvLLsgs.....cyVdessLTGEsnpv ++ +++vGDi+++++++ v+AD++LLs+s++++ cyV+++ L+GE+n++ mKIAA1939 130 EKWMNVKVGDIIKLENNQFVAADLLLLSSSephglCYVETAELDGETNLK 179 lKtdap<-* ++ +p mKIAA1939 180 VRQALP 185 ATPase_P-type: domain 2 of 5, from 323 to 425: score 77.7, E = 2.5e-19 *->iglwtffkiflralillviaiPiaLpvavtia.............la ++l+++f +f+ ++i+l+ ++Pi+L+v+v++++ +++ + ++++ mKIAA1939 323 SFLFSGFLTFWSYVIILNTLVPISLYVSVEVIrlghsyfinwdrkMY 369 vgdkrmailvrslnalEelGqvdyicsDKTGTLTenkmtfkkvyiggeyq ++ k+m++ +r+ +++EelGq++yi+sDKTGTLT+n mtfkk++i+g+ mKIAA1939 370 YASKAMPAEARTTTLNEELGQIEYIFSDKTGTLTQNIMTFKKCSINGRVY 419 agsPdE<-* ag+ ++ mKIAA1939 420 AGEVLD 425 ATPase_P-type: domain 3 of 5, from 495 to 510: score 2.6, E = 13 *->yqagsPdEkAlvkfak<-* yq++sPdE+Alv++a+ mKIAA1939 495 YQVQSPDEGALVTAAR 510 ATPase_P-type: domain 4 of 5, from 536 to 608: score 36.3, E = 1.8e-08 *->kildvlpFtSerKrMsvivrdpdgk...yvKGApevilercsd.... ++l +l+F+ +rKrMsvivr+p+g+ + y KGA+++++e++++++++ mKIAA1939 536 QLLAFLDFNNIRKRMSVIVRNPEGRiklYSKGADTILFEKLHPsned 582 ....teehleelaseGlRtLavAyke<-* ++ t++hl e+a eGlRtLa+Ay+e mKIAA1939 583 lqslTSDHLSEFAGEGLRTLAIAYRE 608 ATPase_P-type: domain 5 of 5, from 648 to 697: score 65.1, E = 5e-16 *->llGltaieDpLredvketIeeLkraGikvwMlTGDnveTAiaIAkec llG+ta+eD+L+e+v+etI L a+ik+w+lTGD++eTAi+I+++c mKIAA1939 648 LLGATAVEDKLQEGVIETITSLSLANIKIWILTGDKQETAINIGYAC 694 glf<-* +++ mKIAA1939 695 NVL 697 ATPase-Plipid: domain 1 of 1, from 33 to 795: score 529.8, E = 1.9e-155 *->FpsNkIsTtKYtvlTFlPKnLFeQFkrfANiYFLvvAllqqvPilsp + +N+I T KY+vlTFlP nLFeQ r+AN+YFL++ +lq +P +s mKIAA1939 33 YADNRIHTSKYNVLTFLPINLFEQLQRVANAYFLFLLILQLIPEISS 79 tnrgtsivPLavVLlvtaiKeAiEDirRrkrDkevNNrltevLegveNeN + +t+ivPL+ V+ ta+K+A +D+ R+k+D++vNNr vL++ mKIAA1939 80 LTWFTTIVPLVLVISMTAVKDATDDYFRHKSDNQVNNRQSKVLIN----- 124 vltdnIsLWRklKKFIsytkedlseelKkkrisRKRHellvtkTVdtish mKIAA1939 - -------------------------------------------------- - RsSLdSidayrlSvdydrleldeinleqganeasvvdrsltgssdgkFve s k mKIAA1939 125 ------------------------------------------S---KLQN 129 ikWKdlrVGDIvKVkkderiPADllLLSSSepdGvCYVETaNLDGETNLK kW +++VGDI+K+ +++++ ADllLLSSSep G+CYVETa LDGETNLK mKIAA1939 130 EKWMNVKVGDIIKLENNQFVAADLLLLSSSEPHGLCYVETAELDGETNLK 179 lRqAleeTqkm.lteediknfsGeIecEqPnasLYsFqGnlkidgkaksk +RqAl+ T+ ++ + ++++f G + cE+Pn+ L F G+l +++ mKIAA1939 180 VRQALPVTSELgADISSLAEFDGIVRCEAPNNKLDRFSGVLSWKD----- 224 IrqlPLspdNiLLRGctLrNTkwviGvVvYTGhDTKlmrNatkaGPsKRS + +Ls + i+LRGc+LrNT w++G V+++G DTKlm+N++k+ + KR+ mKIAA1939 225 -SKHALSNQKIILRGCVLRNTSWCFGMVLFAGPDTKLMQNSGKT-KFKRT 272 riEkelNflIiiLFllLivLclissvgagiysdadgkd.ldlirwYleld i + +N l++ +F++L+ L +i++vg +i ++ +d+ + + +e + mKIAA1939 273 SIDRLMNTLVLWIFGFLVCLGIILAVGSSILE-SEVGDqFRTPPFWREGE 321 kseRPGGkdYeYrnaaangFfsfltalILFssLIPISLYVslElvKsvQA ks + gF +f+ ++I ++L+PISLYVs+E+++ + + mKIAA1939 322 KSF------------LFSGFLTFWSYVIILNTLVPISLYVSVEVIRLGHS 359 tyFInsDlemYhektDtPasvRtSNLnEeLGQVeYiFSDKTGTLTqNiMe yFIn+D+ mY+++ Pa++Rt +LnEeLGQ+eYiFSDKTGTLTqNiM+ mKIAA1939 360 -YFINWDRKMYYASKAMPAEARTTTLNEELGQIEYIFSDKTGTLTQNIMT 408 FkKcsIaGvsYgSdgltevkdalrerkgskveeesakvakDknsmlnelk FkKcsI+G Y + l+ d +++ ++e k+a D s + +k mKIAA1939 409 FKKCSINGRVYAGEVLD---DPIQKK---EITKE--KEATDFSSKSKSEK 450 ilksnsqkapkgftFvdprLvkllktaknkpnakliqeFflaLAiCHtVv F d L+ ++ ++p + eF+++LA+CHtV mKIAA1939 451 -----------TLHFFDQSLMESIEL--GDPK---VHEFLRLLALCHTVM 484 PevnddddpeKGeitYQAaSPDEaALVkaArdlGFvfieRtpksIsllie e ++ + + ++YQ +SPDE+ALV+aAr++GF f +Rtp +++ie mKIAA1939 485 SE-EN-SAGQ---LVYQVQSPDEGALVTAARNFGFIFKSRTPE--TITIE 527 erGkkGkkeekeYeiLnVlEFnSdRKRMSvIvRfPdgnPGDdgrilLlcK e G ++Y++L l Fn RKRMSvIvR+P+g ri+L++K mKIAA1939 528 ELG-----TPVTYQLLAFLDFNNIRKRMSVIVRNPEG------RIKLYSK 566 GADsVifkRLssssGsggnqvieeTkeHLenyAsEGLRTLciAyReLsee GAD++ f+ L ++ T+ HL +A EGLRTL iAyReL+++ mKIAA1939 567 GADTILFEKLHP----SNEDLQSLTSDHLSEFAGEGLRTLAIAYRELDDK 612 EYeeWneeYneAstaLtedReekLdevAelIEkdLiLLGaTAIEDKLQeG + W++ ++A++a +R+e+++ +e IE+dL LLGaTA+EDKLQeG mKIAA1939 613 YFKMWQKMLEDANSATL-ERDERISGLYEEIERDLMLLGATAVEDKLQEG 661 VPetIElLreAGIKiWVLTGDKvETAINIGySCrLlsenM.elivIkees V etI +L+ A+IKiW LTGDK+ETAINIGy+C+ l+ M++l+vI+ ++ mKIAA1939 662 VIETITSLSLANIKIWILTGDKQETAINIGYACNVLTDAMdALFVITGNT 711 ddIrelEdagdldatervveaaikkiLkeyfelegteeefnelkkdhvps ++++ ee++ ++k mKIAA1939 712 -----------AGEVR---------------------EELRCVLK----- 724 gnvALvIDGksLkyaLdeeDlekeFLqLAlkCkAViCCRVSPsQKAdVVk + e mKIAA1939 725 ----------------ERE------------------------------- 727 LVKkst.GrlskiTLAIGDGANDVSMIQeADVGVGIsGkEGmQAvMASDF s++G G E mKIAA1939 728 ----SGkG----------------------------QGRE---------- 735 AIgQFrFLekLLLVHGrWSYkRiskmIlYfFYKNlifalilFWYsfyngF mKIAA1939 - -------------------------------------------------- - sGqtlyedWymvlYNvfFTalPVivLGvfDqDvsaslslryPqLYreGqk T+lP mKIAA1939 736 ------------------TVLP---------------------------- 739 gkefstkvFwgwmldglyQSlviFffpilayklgdfvssGevddfssvGv F+f +++l ++ + + G+ mKIAA1939 740 -----------------------FLF--RSTSL-------GLNHVPHQGL 757 ivfTalVvvvnlkiaLeinrWnwisliaiwgSiLvwlifvivyssifptl i T ++ ++ i s +f mKIAA1939 758 ILAT--------------------RHCLRASNI----------SQVF--- 774 PadisrefykaakrvmstfgFWlvLlvivlisLLPrFtykalqrlfrPtd +++ + l++++ mKIAA1939 775 -----------SGKNLKSCM------------------------LCFKMF 789 yeiVqE<-* +++ E mKIAA1939 790 LDKNLE 795 //