hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mef/mef00064/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1936  ( 716 res)   mef00064

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-MYND  MYND finger                                     27.3    0.00018   1
TPR_2    Tetratricopeptide repeat                        17.6        0.3   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TPR_2      1/3      23    56 ..     1    34 []     4.1       71
zf-MYND    1/1     213   252 ..     1    43 []    27.3  0.00018
TPR_2      2/3     569   602 ..     1    34 []     6.3       40
TPR_2      3/3     611   644 ..     1    34 []     7.6       29

Alignments of top-scoring domains:
TPR_2: domain 1 of 3, from 23 to 56: score 4.1, E = 71
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                        ++ n+  a+++lg+ye  l++  +A          
   mKIAA1936    23    SLCYANRSAALFHLGQYEACLKDIVEAGMHGYPE    56   

zf-MYND: domain 1 of 1, from 213 to 252: score 27.3, E = 0.00018
                   *->CanCgreatksrqLkkCsrCknarYCSkeCQrkdWllgHkreC<-*
                      C+ C++  + +     C+ C  a+YCS+eC +++W l+H +eC   
   mKIAA1936   213    CHRCLKHTLATV---PCGSCSYAKYCSQECMQQAWDLYHSTEC    252  

TPR_2: domain 2 of 3, from 569 to 602: score 6.3, E = 40
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                           ++++ +++ g++e+A++ + ++ e +++    
   mKIAA1936   569    LQQQVCMAQKLLRTGKPEQAIQQLLRCREAAESF    602  

TPR_2: domain 3 of 3, from 611 to 644: score 7.6, E = 29
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                       e+   l++a++ lg++ + +++ +k+l+  ++    
   mKIAA1936   611    GEIEDGLAQAHATLGNWLKSAAHVQKSLQVVETR    644  

//