hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mph/mph00903/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1935 ( 738 res) mph00903 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PWWP domain with conserved PWWP motif 25.2 0.0027 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PWWP 1/1 636 696 .. 1 84 [] 25.2 0.0027 Alignments of top-scoring domains: PWWP: domain 1 of 1, from 636 to 696: score 25.2, E = 0.0027 *->fkpGDlVwAKmkGFPwWPAlv....vspketpsnirktgvviphppl + GD+VwAK+ GFPwWPA++ + +vs+k+ + ++ mKIAA1935 636 ICVGDIVWAKIYGFPWWPARIltitVSRKD--NGLL----------- 669 evlkleeeaknkrkenlypVlFFgdkdtrawvsssklfPLt<-* a++++++ +F +++t + + s l P + mKIAA1935 670 --------ARQEARIS-----WFASPTT-SSLALSQLSPFL 696 //